View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_59 (Length: 253)
Name: NF6870A_low_59
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_59 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 158 - 253
Target Start/End: Original strand, 31658583 - 31658678
Alignment:
| Q |
158 |
ccaatgccaaactttgaaaataaatttaaacttagacagaaacatatccatagccgtcaaaatcctaactggtcaaaaacattctcaaattcaaat |
253 |
Q |
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| T |
31658583 |
ccaatgccaaactttgaaaataaatttacacttagacagaaacatatccatagccatcaaaatcctaactggtcataaacattctcaaattcaaat |
31658678 |
T |
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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 31658521 - 31658558
Alignment:
| Q |
18 |
gacatcataagttaaacgatcaaataaatctcccatta |
55 |
Q |
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| T |
31658521 |
gacatcataagttaaacgatcaaataaatctcccatta |
31658558 |
T |
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