View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_6 (Length: 440)
Name: NF6870A_low_6
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 2 - 428
Target Start/End: Original strand, 32844697 - 32845123
Alignment:
| Q |
2 |
cagatacacgacactaacaccgagacttatataccgataacagtttaagaaaatattaatgattatatgtaaccaaaaatgccgacacttatatacacga |
101 |
Q |
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| T |
32844697 |
cagatacacgacactaacaccgagacttatataccgataacagtttaagaaaatattaatgattatatgtaaccaaaaatgccgacacttatatacacga |
32844796 |
T |
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| Q |
102 |
caatattagacactcgaacacgccttggatatagtgtcagtgcgctacatatgtgattatatctaaaactaaaaattaagcttaatttctaggtgcctgg |
201 |
Q |
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| T |
32844797 |
caatattagacactcgaacacgccttggatatagtgtcagtgcgctacatatgtgattatatctaaaactaaaaattaagcttaatttctaggtgcctgg |
32844896 |
T |
|
| Q |
202 |
aagcttgaaaagcatgattattggaagtttaacttaatttttaaagcataaataaatggacacatgattaagaatttaataatataaacaaaatgaaaca |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844897 |
aagcttgaaaagcatgattattggaagtttaacttaattttgaaagcataaataaatggacacatgattaagaatttaataatataaacaaaatgaaaca |
32844996 |
T |
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| Q |
302 |
gaaaaattgtatgaagttgatgattttacagttacctcattgactgcattcctcaacctctgaacttcaaattcacatttcatcacaaacttctccgcca |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844997 |
gaaaaattgtatgaagttgatgattttacagttacctcattgactgcattcctcaaactctgaacttcaaattcacatttcatcacaaacttctccgcca |
32845096 |
T |
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| Q |
402 |
tttccttgaattccttgatgtccatct |
428 |
Q |
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| T |
32845097 |
attccttgaattccttcatttccatct |
32845123 |
T |
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