View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_61 (Length: 248)
Name: NF6870A_low_61
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_61 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 17006016 - 17006248
Alignment:
| Q |
14 |
tggacatcaagttcttgaacatgttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacct |
113 |
Q |
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| T |
17006016 |
tggacatcaagttcttcaacaggttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacct |
17006115 |
T |
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| Q |
114 |
acacaaggtgaccctccaaaccagnnnnnnnnnggaaaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttga |
213 |
Q |
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| T |
17006116 |
acacaaggtgaccctccaaaccag--aaaaaaaggacaggcaagaggcaatctacaaaagatgaccctccaatctagaagaagaaaagcatattctttga |
17006213 |
T |
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| Q |
214 |
acttccatattggaaggacaatcttctgcgtcata |
248 |
Q |
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| T |
17006214 |
acttccatattggaaggacaatcttttgcgtcata |
17006248 |
T |
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Target: scaffold1075 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 45 - 248
Target Start/End: Complemental strand, 3050 - 2849
Alignment:
| Q |
45 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagnnnnnnn |
144 |
Q |
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| T |
3050 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagaaaaaaa |
2951 |
T |
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| Q |
145 |
nnggaaaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgt |
244 |
Q |
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| T |
2950 |
--ggacaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgt |
2853 |
T |
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| Q |
245 |
cata |
248 |
Q |
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|||| |
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| T |
2852 |
cata |
2849 |
T |
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