View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_66 (Length: 245)
Name: NF6870A_low_66
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 38867828 - 38867581
Alignment:
| Q |
1 |
ttgccaattggaattaaaaaactgaaaagtaaaattattctccatatttctagattgaaaggggttgaatgagtgttatttgatgnnnnnnnnnn----- |
95 |
Q |
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| T |
38867828 |
ttgccaattgtaattaaaaaactgaaaagtaaaatgatactccatatttctagattgaaaggggttgaatgagtgttatttgatgttttttttttttttt |
38867729 |
T |
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| Q |
96 |
---gctgtttcattcttttgaagcatgaacttctcaaactgtatgtattttattcaactactatttactatttagtttcattcttctg-aatagaccctt |
191 |
Q |
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| T |
38867728 |
ttggctgtttcatttttttgaagcaggaacttctgatattgtatgtattttattcaactactatttactatttagtttcattcttctgaaatagaccctt |
38867629 |
T |
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| Q |
192 |
cacagttcacacagacattcaccatatcattgccttgatattcttcga |
239 |
Q |
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| T |
38867628 |
cacagttcacacagacactcaccatatcattgccttgattttgttcga |
38867581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 38598776 - 38598698
Alignment:
| Q |
1 |
ttgccaattggaattaaaaaactgaaaagtaaaattattctccatatttctagattgaaaggggttgaatgagtgttat |
79 |
Q |
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| T |
38598776 |
ttgccaattgtcattaaagaactgaaaagtgaaataatactccatattgttagattgaaaggggttgaatgagtgttat |
38598698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 39953726 - 39953790
Alignment:
| Q |
12 |
aattaaaaaactgaaaagtaaaattattctccatatttctagattgaaaggggttgaatgagtgt |
76 |
Q |
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| T |
39953726 |
aattaaagaactgaaaagtgaaataatactccatattgctagattgaaaggggttgaatgagtgt |
39953790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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