View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_69 (Length: 243)
Name: NF6870A_low_69
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_69 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 8947195 - 8946994
Alignment:
| Q |
20 |
cactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8947195 |
cactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
8947096 |
T |
|
| Q |
120 |
ggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagctatgtcaatttgcaaataccaacaattcatcatt |
219 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |
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| T |
8947095 |
ggcccgagagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgaaaatagcaacaattcatcatt |
8946996 |
T |
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| Q |
220 |
tt |
221 |
Q |
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|| |
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| T |
8946995 |
tt |
8946994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 8973299 - 8973501
Alignment:
| Q |
19 |
tcactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgtt |
118 |
Q |
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|||||||||||||||||||||||| ||| ||| |||||||||||||||||||| | | ||| ||||||||||| ||||| ||||||| | |||||| |
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| T |
8973299 |
tcactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtatgattgataccggtgtt |
8973398 |
T |
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| Q |
119 |
tggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagctatgtcaatttgcaaataccaacaattcatcat |
218 |
Q |
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| T |
8973399 |
tggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaataccaacaattcatctt |
8973498 |
T |
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| Q |
219 |
ttt |
221 |
Q |
| |
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||| |
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| T |
8973499 |
ttt |
8973501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 8961899 - 8962099
Alignment:
| Q |
21 |
actcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgtttg |
120 |
Q |
| |
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||||||| ||||||||||| || ||||| | |||||| |||| ||||||| | | ||| ||||||||||| ||||| ||||||| | |||||||| |
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| T |
8961899 |
actcacctcaattccttggtcttaatccctacaaaggggtgtggctagcttctgattatggaaaagatgtcattgttggtgtgattgataccggtgtttg |
8961998 |
T |
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| Q |
121 |
gcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagctatgtcaatttgcaaataccaacaattcatcattt |
220 |
Q |
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||| |||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |
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| T |
8961999 |
gccagaaagtgaaagtttcaatgataatggatttactaaaattccttcaaaatggaaagggaaattatgtcaatttgaaaataccaacaattcatctttt |
8962098 |
T |
|
| Q |
221 |
t |
221 |
Q |
| |
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| |
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|
| T |
8962099 |
t |
8962099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 21688346 - 21688169
Alignment:
| Q |
20 |
cactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
119 |
Q |
| |
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|||||||| ||||| |||||||| ||||||| | ||||||||||||| ||||| | |||||| ||||| ||||| ||||| | || ||| | ||||||| |
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| T |
21688346 |
cactcacctcaatttcttggccttaatccatatagaggggcatggccaacttctgattttggtaaagatatcattgttggtgtaatagacactggtgttt |
21688247 |
T |
|
| Q |
120 |
ggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagctatgtcaatttg |
197 |
Q |
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|||| |||||||||||||||| ||| |||||||||||||||| || |||||||||||||| | |||||||||||| |
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| T |
21688246 |
ggccagaaagtgaaagttttagagatgatggaatgactaaaataccctcaaaatggaaaggccaattatgtcaatttg |
21688169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 34963857 - 34963779
Alignment:
| Q |
102 |
tgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagg |
180 |
Q |
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|||||||| |||| |||||||| |||||||| || || || ||| |||||||||||||||| ||||||||||||||||| |
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| T |
34963857 |
tgattgacacaggagtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaagg |
34963779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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