View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6870A_low_70 (Length: 242)
Name: NF6870A_low_70
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_70 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 1045813 - 1045611
Alignment:
| Q |
25 |
ataagttatagccacaattcaagtcatatcaactccttaaacaaactacttttccattttctttaaattttaacaaaaatttcagtcacacacacagaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1045813 |
ataagttatagccacaattcaagtcatatcaactccttaaacaaactacttttccattttctttaaattttaacaaaaatttcagtcaca--cacagaat |
1045716 |
T |
|
| Q |
125 |
gtttgccaaaaataacaaataacaagataaattgaaaaaattaggagcacaaaacgtgattacagtgagttatttattatacttgttaatcgaatagatt |
224 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1045715 |
gtttgccaaaaataacagataacaagataaattgaaaaaattaggagcacaa-------------tgagttatttattatacttgttaatcgaatagatt |
1045629 |
T |
|
| Q |
225 |
caaacagtgaagaaaaga |
242 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1045628 |
caaacagtgaagaaaaga |
1045611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University