View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6870A_low_8 (Length: 420)
Name: NF6870A_low_8
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 362
Target Start/End: Complemental strand, 45682231 - 45681878
Alignment:
| Q |
15 |
ataagcttaattaaaggtatgtcctacaaa-gattaatatcacataatcccatggacaataatgccacacatttctttccttatgtaagtcatcttggct |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45682231 |
ataagcttaattaaaggtatgtcctacaaaagattaatatcacataatcccatggacaataatgccacacatttctttccttatgtaagtcatcttggct |
45682132 |
T |
|
| Q |
114 |
gcagaatataaatgggggaccaggggccacaattactaaaatttcnnnnnnnnnnnnnnnnnnnnnnnntatataaacaatcccagctcagcattgataa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45682131 |
gcagaatataaatgggggaccaggggccacaattactaaaatttccacatacacaaaaacacacacacatatataaacaatcccagctcagcattgataa |
45682032 |
T |
|
| Q |
214 |
gacaaattaattataatatactgtacagcatattatacaagtgattttggattagatttgtctcaactattgtctgtctt-----gattattaggacggt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45682031 |
gacaaattaattataatatactgtacagcatattgtacaagtgattttggattagatttgtctcaactattgtctgtcttgatttgattattaggacggt |
45681932 |
T |
|
| Q |
309 |
tcaatttgagaacttgacatacctattgactcctaccttcaatgactaaggttc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45681931 |
tcaatttgagaacttgacatacctattgactcctaccttcaatgactaaggttc |
45681878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 415
Target Start/End: Complemental strand, 45681824 - 45681795
Alignment:
| Q |
386 |
cagtccttcccatacatgcatgtttcttgt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45681824 |
cagtccttcccatacatgcatgtttcttgt |
45681795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University