View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_82 (Length: 228)
Name: NF6870A_low_82
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_82 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 55341744 - 55341951
Alignment:
| Q |
21 |
catcttcgatgagatgagaaaagcacctgagatggatttccaagcaagacttgccatgcttggcgcagcnnnnnnnnnnnnntaagctggccttagcact |
120 |
Q |
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| T |
55341744 |
catcttcgatgagatgagaaaagcacctgagatggatttccaagcaagacttgccatgcttggtgcagcaaaaaacaaaaaataagctggccttagcact |
55341843 |
T |
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| Q |
121 |
acaggaaactgattactacttgttagacgctgatacagcgtcacaaatagaatcaaataatgtaccattcctaatgaatacattgaaattgcaatctcgt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55341844 |
acaggaaactgattactacttgttagacgctgatacagcgtcacaaatagaatcaaataatgtaccattcctaatgaatacattgaaattgcaatctcgt |
55341943 |
T |
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| Q |
221 |
tccaacca |
228 |
Q |
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|||||||| |
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| T |
55341944 |
tccaacca |
55341951 |
T |
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