View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_83 (Length: 228)
Name: NF6870A_low_83
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_83 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 9805337 - 9805110
Alignment:
| Q |
1 |
tcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatttttgttttattcggttattaaaatatgta |
100 |
Q |
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| T |
9805337 |
tcattgaacaggacaagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattttttttttattcggttattaaaatatgta |
9805238 |
T |
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| Q |
101 |
cttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaa |
200 |
Q |
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| T |
9805237 |
cttgtatttgttattttctatttacttctagtacacattttatattaaatttttgtacataggaatgcatcaaagggaaaaggaattcttgttgaacaaa |
9805138 |
T |
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| Q |
201 |
atgaaaagcaccagtgatgagcaggaag |
228 |
Q |
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| T |
9805137 |
atgaaaagcactggtgatgaggaggaag |
9805110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 56 - 228
Target Start/End: Complemental strand, 9818211 - 9818037
Alignment:
| Q |
56 |
aaggtatattgtgattt--ttgttttattcggttattaaaatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttt |
153 |
Q |
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| T |
9818211 |
aaggtatattgtgatttattttttttatacggttattaaattatgtacttgtatttgttattttctatttacttctagtacacaatttatattaaatttt |
9818112 |
T |
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| Q |
154 |
tgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcaccagtgatgagcaggaag |
228 |
Q |
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| T |
9818111 |
tgtacacaagaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcactagtgatgaggaggaag |
9818037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 9806459 - 9806621
Alignment:
| Q |
1 |
tcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatt--tttgttttattcggttattaaaatatg |
98 |
Q |
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| T |
9806459 |
tcattgaacaagacaagatggaaggtatttcacgtgctcacgaaaagggagaatcaaggtatattgtgatttatttattttagttggttattcaaatatg |
9806558 |
T |
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| Q |
99 |
tacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacaca |
161 |
Q |
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| T |
9806559 |
tacttgtgtttgttattttctatttgtttctaatacacattttatatttaatttttgtacaca |
9806621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 9806621 - 9806653
Alignment:
| Q |
173 |
aagggaaaaggaattcttgttgaacaaaatgaa |
205 |
Q |
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| T |
9806621 |
aagggaaaaggaattattgttgaacaaaatgaa |
9806653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 12278 - 12071
Alignment:
| Q |
1 |
tcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgt |
99 |
Q |
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| T |
12278 |
tcattgatcatgacaagatggaaggtattccatgtactcatgaaaagggggaatcaacgtattttgtgatttatttttttagttggttattcaattatgt |
12179 |
T |
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| Q |
100 |
acttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaa |
199 |
Q |
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| T |
12178 |
acttatgtttgttattttatatttacttctagtac-cattttatattaaattttggtacacgataatgcagcgaagggagaaggaattcttgttgaacaa |
12080 |
T |
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| Q |
200 |
aatgaaaag |
208 |
Q |
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| T |
12079 |
aatgaaaag |
12071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 2371144 - 2371052
Alignment:
| Q |
22 |
aaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta |
113 |
Q |
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| T |
2371144 |
aaggtattccatgtactcgtgaaaaaggagaatcaaggtatattgtgatttatttttttagtcgattattcaaatatatacttatgtttgtta |
2371052 |
T |
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