View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6870A_low_86 (Length: 226)
Name: NF6870A_low_86
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_86 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 35231330 - 35231130
Alignment:
| Q |
21 |
ggagtacatgtcacactcatttcaggaatttttgcaatctaatagcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35231330 |
ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa |
35231231 |
T |
|
| Q |
121 |
agaaacaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccat |
220 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
35231230 |
agaaaaaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacga-ttttggtgtgaagctctttccactgctgtccat |
35231132 |
T |
|
| Q |
221 |
ct |
222 |
Q |
| |
|
|| |
|
|
| T |
35231131 |
ct |
35231130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 11292194 - 11292394
Alignment:
| Q |
21 |
ggagtacatgtcacactcatttcaggaatttttgcaatctaatagcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
11292194 |
ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccataacaaaatggggtagcggaa |
11292293 |
T |
|
| Q |
121 |
agaaacaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccat |
220 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
11292294 |
agaaaaaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacga-ttttggtgtgaagctctttccactgctgtccat |
11292392 |
T |
|
| Q |
221 |
ct |
222 |
Q |
| |
|
|| |
|
|
| T |
11292393 |
ct |
11292394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 15085831 - 15086031
Alignment:
| Q |
21 |
ggagtacatgtcacactcatttcaggaatttttgcaatctaatagcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
15085831 |
ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgccccttaactccacaacaaaatggggtagcggaa |
15085930 |
T |
|
| Q |
121 |
agaaacaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccat |
220 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
15085931 |
agaaaaaaccgtcatttgtttgatgttgttcgcacccttttgttagagtctcatgtgccttcacga-ttttggtgtgaagctctttccactgctgtccat |
15086029 |
T |
|
| Q |
221 |
ct |
222 |
Q |
| |
|
|| |
|
|
| T |
15086030 |
ct |
15086031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 44874021 - 44873836
Alignment:
| Q |
25 |
tacatgtcacactcatttcaggaatttttgcaatctaatagcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaaag-a |
123 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| ||| | |||||||||||||| |||||||||||| |||||||||||||||||| ||||||||| | |
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|
| T |
44874021 |
tacatgtcacactcatttcaagcatttttgcaatacaatggtattatatctcaaagatcatgcccctcagctccacaacaaaatggggcagcggaaagaa |
44873922 |
T |
|
| Q |
124 |
aacaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccac |
210 |
Q |
| |
|
|| ||||| ||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
44873921 |
aaaaaccgccatttgcttgatgttgttcacactcttttgttgaagtctcatgtgccttcacga-ttttggtgtgaagccctttccac |
44873836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 64373 - 64573
Alignment:
| Q |
21 |
ggagtacatgtcacactcatttcaggaatttttgcaatctaatagcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
64373 |
ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa |
64472 |
T |
|
| Q |
121 |
agaaacaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccat |
220 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || | ||||| |
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|
| T |
64473 |
agaaaaaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacga-ttttggtgtgaagctctttccattgctatccat |
64571 |
T |
|
| Q |
221 |
ct |
222 |
Q |
| |
|
|| |
|
|
| T |
64572 |
ct |
64573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 5880819 - 5880765
Alignment:
| Q |
71 |
tatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaaagaaa |
125 |
Q |
| |
|
|||||||||||||||| || || ||||| |||||||| ||||||||||||||||| |
|
|
| T |
5880819 |
tatctcaaaggtcatgtccttccactccccaacaaaacggggtagcggaaagaaa |
5880765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 28146658 - 28146856
Alignment:
| Q |
21 |
ggagtacatgtcacactcatttcaggaatttttgcaatctaatagcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28146658 |
ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcagaa |
28146757 |
T |
|
| Q |
121 |
agaaacaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccat |
220 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
28146758 |
agaaaaaactgtcatttgcttgatgttgttctcacccttttgttagagtctcatgtgccttcacga-ttttggtgtgaagctctttccactgttgtccat |
28146856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 5288908 - 5289104
Alignment:
| Q |
25 |
tacatgtcacactcatttcaggaatttttgcaatctaatagcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaaagaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5288908 |
tacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgtccctcaactccacaacaaaatggggtagcggaaagaa |
5289007 |
T |
|
| Q |
125 |
acaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccatct |
222 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |
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|
| T |
5289008 |
aaaaccgtcatttgcttgatgttgttcgcaccgttttgttagagtctcatgtgccttcacg-gttttggtgtgaagctctttccactgctgttcatct |
5289104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 18414930 - 18415126
Alignment:
| Q |
25 |
tacatgtcacactcatttcaggaatttttgcaatctaatagcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaaagaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18414930 |
tacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgtccctcaactccacaacaaaatggggtagcggaaagaa |
18415029 |
T |
|
| Q |
125 |
acaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccatct |
222 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |
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|
| T |
18415030 |
aaaaccgtcatttgcttgatgttgttcgcaccgttttgttagagtctcatgtgccttcacg-gttttggtgtgaagctctttccactgctgttcatct |
18415126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 19919463 - 19919659
Alignment:
| Q |
25 |
tacatgtcacactcatttcaggaatttttgcaatctaatagcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaaagaa |
124 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19919463 |
tacatgtcacactcatttcaagcatttttgcaatctaatggcattatatctcaaaggtcatgcgcctcgactccacaacaaaatggggtagcggaaagaa |
19919562 |
T |
|
| Q |
125 |
acaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccatct |
222 |
Q |
| |
|
| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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|
| T |
19919563 |
aaaaccgtcatttgctcgatgttgttcgcacccatttgttagagtctcatgtgccttcacga-ttttggtatgaagctctttccactgatgtccatct |
19919659 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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