View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6870A_low_88 (Length: 226)

Name: NF6870A_low_88
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6870A_low_88
NF6870A_low_88
[»] scaffold0428 (2 HSPs)
scaffold0428 (14-226)||(2382-2594)
scaffold0428 (14-226)||(15059-15265)
[»] chr6 (9 HSPs)
chr6 (14-226)||(33258261-33258473)
chr6 (19-226)||(33414634-33414840)
chr6 (14-163)||(33293102-33293251)
chr6 (71-219)||(31564920-31565067)
chr6 (19-226)||(33395120-33395326)
chr6 (25-117)||(28872999-28873091)
chr6 (96-226)||(33269607-33269740)
chr6 (14-226)||(33278988-33279194)
chr6 (173-226)||(33384095-33384148)
[»] chr2 (1 HSPs)
chr2 (14-226)||(17447703-17447915)


Alignment Details
Target: scaffold0428 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 2594 - 2382
Alignment:
Q  14 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2594 aaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 2495  T
Q  114 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtggacggtgaaacc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2494 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 2395  T
Q  214 gactttgttggca 226  Q
    |||||||||||||    
T  2394 gactttgttggca 2382  T

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Target: scaffold0428; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 15059 - 15265
Alignment:
Q  14 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 113  Q
    |||| |||| |||| |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| |||     
T  15059 aaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcatacctta-gaaaaagggtctcttatca 15157  T
Q  114 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtggacggtgaaacc 213  Q
    ||||| ||||||||||| |  |||  |    |||||||||| |||||||| || || ||||||||||||  ||||||||||||||||  || ||||||||    
T  15158 gctgacaagaaatccggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaacc 15252  T
Q  214 gactttgttggca 226  Q
    ||||||| |||||    
T  15253 gactttgatggca 15265  T

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Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 33258473 - 33258261
Alignment:
Q  14 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258473 aaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 33258374  T
Q  114 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtggacggtgaaacc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33258373 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 33258274  T
Q  214 gactttgttggca 226  Q
    |||||||||||||    
T  33258273 gactttgttggca 33258261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 33414840 - 33414634
Alignment:
Q  19 gtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctga 118  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  33414840 gtgcagggatgatggactgtaagaaagctcttgctgaaacggaaggcgatcttgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctga 33414741  T
Q  119 taagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtggacggtgaaaccgactt 218  Q
    |||||||||||| ||||||||||  |||||||||||||||||||| || || |||| |||  ||||||||||||||||||||| || ||||||| |||||    
T  33414740 taagaaatccggaagactagcagctgaaggaagaatcggtacata-cattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactt 33414642  T
Q  219 tgttggca 226  Q
    ||||||||    
T  33414641 tgttggca 33414634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 33293251 - 33293102
Alignment:
Q  14 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 113  Q
    |||| |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  | ||||||| ||||  |||||||||||||||| |    
T  33293251 aaccggtgctgggatgatggactgtaagaaagctcatgctgaaacagaaggtgatcttgaaaaggtgaaagcatacctcagaaaaaagggtctctcattc 33293152  T
Q  114 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacata 163  Q
    ||||||||||||||| | ||||||||||  ||||||||||| ||||||||    
T  33293151 gctgataagaaatccagaagactagcagctgaaggaagaattggtacata 33293102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 219
Target Start/End: Original strand, 31564920 - 31565067
Alignment:
Q  71 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 170  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  |||||||||||||||||||| || ||     
T  31564920 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacata-cattca 31565018  T
Q  171 cgattcacacattggtgttctaattgaagtggacggtgaaaccgacttt 219  Q
    |||||||| |||| ||||||||||||||||| |  ||||||| ||||||    
T  31565019 cgattcacgcattagtgttctaattgaagtgaaatgtgaaacggacttt 31565067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 33395326 - 33395120
Alignment:
Q  19 gtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctga 118  Q
    |||| ||||| |||||||||||||||||    ||||||||  ||||||||||||||||| | ||| |||| || |  | ||||||||||||||| |||||    
T  33395326 gtgctgggattatggactgtaagaaagccttagccgaaactaaaggtgatcttgaaaaggcccaatcataccttagaacaaagggtctctcatcagctga 33395227  T
Q  119 taagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtggacggtgaaaccgactt 218  Q
     ||||||||||| || |||||||  |||||||||||||||| ||| || |  |||| ||| |||   |||||| ||||||||| || |||||||||||||    
T  33395226 caagaaatccggtaggctagcagctgaaggaagaatcggtaaata-cattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactt 33395128  T
Q  219 tgttggca 226  Q
    ||||||||    
T  33395127 tgttggca 33395120  T

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Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 28872999 - 28873091
Alignment:
Q  25 ggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctg 117  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||| || ||||||| ||||   |||||||||||||||| ||||    
T  28872999 ggatgatggactgtaagaaagcccttgccgaaacagaaggtgatcttgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 226
Target Start/End: Complemental strand, 33269740 - 33269607
Alignment:
Q  96 aaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatat---cactcgcgattcacacattggtgttcta 192  Q
    ||||||||||||||||||||||||||||| || |  ||||||||||  |||| ||||||||||||||||   || || | || ||  ||| |||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  193 attgaagtggacggtgaaaccgactttgttggca 226  Q
    ||||||||| || |||||||||||||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggca 33269607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 33279194 - 33278988
Alignment:
Q  14 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 113  Q
    |||| |||| |||| |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| |||     
T  33279194 aaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcatacctta-gaaaaagggtctcttatca 33279096  T
Q  114 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtggacggtgaaacc 213  Q
    ||||| ||||||||||| |  |||  |    |||||||||| |||||||| || || ||||||||||||  ||||||||||||||||  || ||||||||    
T  33279095 gctgacaagaaatccggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaacc 33279001  T
Q  214 gactttgttggca 226  Q
    ||||||| |||||    
T  33279000 gactttgatggca 33278988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 33384148 - 33384095
Alignment:
Q  173 attcacacattggtgttctaattgaagtggacggtgaaaccgactttgttggca 226  Q
    |||||||||| |||||||||||||||||| || || ||||||||||||| ||||    
T  33384148 attcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggca 33384095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 17447703 - 17447915
Alignment:
Q  14 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaa-gggtctctcatc 112  Q
    |||| |||| ||||| ||||||||||||||||| | ||||||||| |||||||||||||||||| |||||||||| ||||  ||||| ||||||||||||    
T  17447703 aaccggtgctgggattatggactgtaagaaagcccttgccgaaactgaaggtgatcttgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatc 17447802  T
Q  113 cgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtggacggtgaaac 212  Q
    |||||||||||||||||| ||||| ||||  |||||||||||||||||||| || || |||| ||| ||| |||| |||||||||| || ||  ||||||    
T  17447803 cgctgataagaaatccggaagactggcagctgaaggaagaatcggtacata-cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaac 17447901  T
Q  213 cgactttgttggca 226  Q
    ||||||||||||||    
T  17447902 cgactttgttggca 17447915  T

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