View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_9 (Length: 407)
Name: NF6870A_low_9
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_9 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 34900908 - 34900536
Alignment:
| Q |
16 |
catcaccattagctagaagagaaccacacaaaggcacaaacatttatttaattcacaatc-gttgtatatttgaaaacttataaagcttgtaaaagttgt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
34900908 |
catcaccattagctagaagagaaccacacaaaggcacaaacatttatttaattcacaatcagttgtatatttgaaaacttataaagtttgtaaaagttgt |
34900809 |
T |
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| Q |
115 |
cacttaaataaaaatatttcaaaagaaattccaacgttgtaaggaggtggagtcaaaaataacttttttaaaataaagtgtagaaaaaactcaatttaac |
214 |
Q |
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|| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34900808 |
caattaaataaaaatatttcaaaagaaattcgaacgttgtaaggaggtggaatcaaaaataacttttttaaaataaagtgtagaaaaaactcaatttagt |
34900709 |
T |
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| Q |
215 |
aatataatcataaccagtgaggcgaaaactagttccatttcatcgatagctcttttctcctaagtgctgtcttccccttagtggtggcttcatctaacat |
314 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |
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| T |
34900708 |
aatataatcataacgagtgaggcgagaactagttccatttcattgatagctcttttcttctaagagctgtctttcccttagtggtggcttcatctaacat |
34900609 |
T |
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| Q |
315 |
ataactcttttctctcgattcaaaaacaaaaacataagatatttctcaattaaggagtttacatccctttgat |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34900608 |
ataactcttttctctcgattcaaaaacaaaaacataagatatttctcaattaaggagtttacatctctttgat |
34900536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 339
Target Start/End: Original strand, 26894639 - 26894737
Alignment:
| Q |
241 |
aactagttccatttcatcgatagctcttttctcctaagtgctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa |
339 |
Q |
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| T |
26894639 |
aactagctccatctcgttgatagctctttcctgctaagagtggcctttctcttagtggtagcttcatctaacagataactcttttctctcgactcaaaa |
26894737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 339
Target Start/End: Original strand, 26900078 - 26900176
Alignment:
| Q |
241 |
aactagttccatttcatcgatagctcttttctcctaagtgctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa |
339 |
Q |
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|||||| ||||| || | ||||||||||| || ||||| | | ||| | ||||||||| ||||||||||||| |||||||||||||||||| |||||| |
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| T |
26900078 |
aactagctccatctcgttgatagctctttcctgctaagagtggcctttctcttagtggtagcttcatctaacagataactcttttctctcgactcaaaa |
26900176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 339
Target Start/End: Complemental strand, 4405887 - 4405789
Alignment:
| Q |
241 |
aactagttccatttcatcgatagctcttttctcctaagtgctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa |
339 |
Q |
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|||||| ||||| || | ||||||||||| || ||||| | | ||| ||||||||||| |||||||||||| ||| |||||||||||||| |||||| |
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| T |
4405887 |
aactagctccatctcgttgatagctctttcctactaagagtggcctttcccttagtggtagcttcatctaacggatagctcttttctctcgactcaaaa |
4405789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 20023954 - 20024008
Alignment:
| Q |
123 |
taaaaatatttcaaaagaaattccaacgttgtaaggaggtggagtcaaaaataac |
177 |
Q |
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| T |
20023954 |
taaaaatatttcaaaagaaaatcaaacgttgtaaagagatggaatcagaaataac |
20024008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 364
Target Start/End: Original strand, 183182 - 183286
Alignment:
| Q |
259 |
gatagctcttttctcctaagtgctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaacaaaaacataagatattt |
358 |
Q |
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|||||||||||||||||||| | ||| || |||||||| ||| || |||||| |||||||||||||||||| || ||||||||||| ||| |||||| |
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| T |
183182 |
gatagctcttttctcctaagagtgacctttcctttagtggtagctccacctaacaaataactcttttctctcgactc-aaaacaaaaacgtaaaatattt |
183280 |
T |
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| Q |
359 |
ctcaat |
364 |
Q |
| |
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||||| |
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| T |
183281 |
ttcaat |
183286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 340
Target Start/End: Original strand, 29467354 - 29467405
Alignment:
| Q |
289 |
cccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaa |
340 |
Q |
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||||||||||| | ||||||||||| ||| |||||||||||||| ||||||| |
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| T |
29467354 |
cccttagtggtagattcatctaacagatatctcttttctctcgactcaaaaa |
29467405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 30945022 - 30944960
Alignment:
| Q |
283 |
gtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaacaaaa |
345 |
Q |
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||||| ||||||||||| ||| ||||||||| ||| |||||||||||||| | ||||| |||| |
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| T |
30945022 |
gtctttcccttagtggtagctccatctaacagatagctcttttctctcgactaaaaaaaaaaa |
30944960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 30943989 - 30943933
Alignment:
| Q |
283 |
gtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa |
339 |
Q |
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||||| ||||||||||| ||| |||||||| ||| |||||||||||||| |||||| |
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| T |
30943989 |
gtctttcccttagtggtagctccatctaacggatagctcttttctctcgactcaaaa |
30943933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 339
Target Start/End: Complemental strand, 9814797 - 9814699
Alignment:
| Q |
241 |
aactagttccatttcatcgatagctcttttctcctaagtgctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa |
339 |
Q |
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|||||| ||||| || | ||||||||||| || ||||| | | ||| | ||||||||| |||||||||||| ||| |||||||||||||| |||||| |
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| T |
9814797 |
aactagctccatctcgttgatagctctttcctactaagagtggcctttctcttagtggtagcttcatctaacggatagctcttttctctcgactcaaaa |
9814699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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