View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_90 (Length: 223)
Name: NF6870A_low_90
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_90 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 33650050 - 33649868
Alignment:
| Q |
22 |
ggaagatgcaattagagcttaaaattgaagtagtcattgttagacccaccaagatatgaaatttaaccgttggatcaaaatcggacgctaacgattttaa |
121 |
Q |
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| T |
33650050 |
ggaagatgcaattagagcttaaaattgaagtagtcattgttagacccaccaagatatgaaatttaaccgttggatcaaaatcggacgctaacgattttaa |
33649951 |
T |
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| Q |
122 |
actcggtattttagnnnnnnnnnnnctttaaataatcaaatcatgtatttaaatttggatctatcaatctcatttccaaatatt |
205 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
33649950 |
actcggtattttag-ttttttttttctttaaataatcaaatcatgtattgaaatttggatctatcaatctcatatccaaatatt |
33649868 |
T |
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