View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6870A_low_94 (Length: 218)
Name: NF6870A_low_94
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_94 |
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| [»] chr1 (4 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 7386418 - 7386610
Alignment:
| Q |
26 |
atactattaattaaaagaaataaaactcaaagtattacaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaact |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7386418 |
atactattaattaaaagaaataaaactcaaagtattacaaaatctgacaattacaggaaaaggaacgtagtaatgcattgctaccatgtataatttaact |
7386517 |
T |
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| Q |
126 |
actcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct |
218 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
7386518 |
actcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggatgggcgatgtgtatgctct |
7386610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 198
Target Start/End: Complemental strand, 19991350 - 19991215
Alignment:
| Q |
62 |
acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga |
161 |
Q |
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| T |
19991350 |
acaaaatc-aacaattgcaggaaaaggaaggtagtaatccattattaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatga |
19991252 |
T |
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| Q |
162 |
cacgagagcattggttagtgtgataccacccatatgg |
198 |
Q |
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||| | |||||||| ||||||||||||||||||||| |
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| T |
19991251 |
cacaaaagcattgggcagtgtgataccacccatatgg |
19991215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 19322733 - 19322649
Alignment:
| Q |
115 |
atagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgga |
199 |
Q |
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| T |
19322733 |
atagtttaactactcaattctaaagccaattattcatgatattatgacacaagaacgttggttattgtaataccacccatatgga |
19322649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 19322781 - 19322751
Alignment:
| Q |
26 |
atactattaattaaaagaaataaaactcaaa |
56 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
19322781 |
atactattaattaaaagaaataaaactcaaa |
19322751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 4925203 - 4925400
Alignment:
| Q |
26 |
atactattaattaaaagaaataaaactcaaagtatt-----------acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgt |
114 |
Q |
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||||||||||||||||||||||| |||||||||||| | |||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
4925203 |
atactattaattaaaagaaataatactcaaagtattctaaaatatgtataaaatctaacaattac------aggaacgtagtaatgcattgttaccatgt |
4925296 |
T |
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| Q |
115 |
atagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4925297 |
atagtttaactactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggacagacgatgcgtatg |
4925396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 35205787 - 35205943
Alignment:
| Q |
62 |
acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga |
161 |
Q |
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|||||||| |||||| | |||||||||| | ||||||||||| || ||||| |||||||||| |||||||| ||| ||||||||| ||||| |||||| |
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| T |
35205787 |
acaaaatcagacaattgcaggaaaaggaaggcagtaatgcattacttccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatga |
35205886 |
T |
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| Q |
162 |
cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct |
218 |
Q |
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||| | |||||||| || |||||||||||||||||| ||| ||||||| ||||||| |
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| T |
35205887 |
cacaaaagcattgggtaatgtgataccacccatatgtgcaggcgatgtgcatgctct |
35205943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 35211344 - 35211207
Alignment:
| Q |
81 |
ggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagt |
180 |
Q |
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|||||||||| | ||||||||||| |||||||| |||||||||| |||||||| ||| ||||||||| ||||| ||||||||| | |||||||| || | |
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| T |
35211344 |
ggaaaaggaaggcagtaatgcattactaccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatgacacaaaagcattgggtaat |
35211245 |
T |
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| Q |
181 |
gtgataccacccatatggacagacgatgtgtatgctct |
218 |
Q |
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||||||||||||||||| ||| |||||| ||||||| |
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| T |
35211244 |
gtgataccacccatatgtgcaggtgatgtgcatgctct |
35211207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 52314493 - 52314649
Alignment:
| Q |
62 |
acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga |
161 |
Q |
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|||||||| |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||| ||||| |||||| |
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| T |
52314493 |
acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga |
52314592 |
T |
|
| Q |
162 |
cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct |
218 |
Q |
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||| | |||||||| | |||||||||||||||||| ||| ||||||| ||||||| |
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|
| T |
52314593 |
cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctct |
52314649 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 53464903 - 53465059
Alignment:
| Q |
62 |
acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga |
161 |
Q |
| |
|
|||||||| |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||| ||||| |||||| |
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| T |
53464903 |
acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga |
53465002 |
T |
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| Q |
162 |
cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct |
218 |
Q |
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||| | |||||||| | |||||||||||||||||| ||| ||||||| ||||||| |
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| T |
53465003 |
cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctct |
53465059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 1995809 - 1995906
Alignment:
| Q |
97 |
aatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccat |
194 |
Q |
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||||||||||||| ||| | ||||| ||||||| ||||| |||||||||| | ||||||||||| | || ||||| || ||||| |||||||||| |
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| T |
1995809 |
aatgcattgctactatggttggtttagctactcatatccaatgccaattatccaagatattatgactcaagtgcattagtcagtgtattaccacccat |
1995906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 218
Target Start/End: Original strand, 23563558 - 23563711
Alignment:
| Q |
65 |
aaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacac |
164 |
Q |
| |
|
|||||| |||||| | |||||||||| ||||||||||||| | |||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||||||| |
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| T |
23563558 |
aaatctgacaattgcaggaaaaggaaggtagtaatgcattaccaccatggatagtttaactactcaatttcaatgtcaattatccatgatcttatgacac |
23563657 |
T |
|
| Q |
165 |
gagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct |
218 |
Q |
| |
|
| |||||||| ||||||||||||||||||| ||| ||||||| ||||||| |
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|
| T |
23563658 |
aaaagcattgggcagtgtgataccacccatatatgcagccgatgtgcatgctct |
23563711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 48265287 - 48265404
Alignment:
| Q |
93 |
tagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccaccc |
192 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||| | |||||||| ||||||||||||||| |
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| T |
48265287 |
tagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatgacacaaaagcattggacagtgtgataccaccc |
48265386 |
T |
|
| Q |
193 |
atatggacagacgatgtg |
210 |
Q |
| |
|
||||| ||| ||||||| |
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| T |
48265387 |
atatgtgcaggcgatgtg |
48265404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 39375604 - 39375513
Alignment:
| Q |
127 |
ctcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||| | ||||||||||||| |
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|
| T |
39375604 |
ctcaattccaaagccaattatccatgatattatgacacaagagtattggttagtatgataccacccatatggacaggcaatgtgtatgctct |
39375513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 39375665 - 39375627
Alignment:
| Q |
30 |
tattaattaaaagaaataaaactcaaagtattacaaaat |
68 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |
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| T |
39375665 |
tattaattaaaagaaataaaacttaaagtattacaaaat |
39375627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 40278604 - 40278492
Alignment:
| Q |
106 |
ctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacg |
205 |
Q |
| |
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|||||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||||||| | |||||||| |||||||||||||||||||| ||| || |
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| T |
40278604 |
ctaccatggatagtttaactactcaatttcaatgtcaattatccatgattttatgacacaaaagcattggccagtgtgataccacccatatgtgcaggcg |
40278505 |
T |
|
| Q |
206 |
atgtgtatgctct |
218 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40278504 |
atgtgtatgctct |
40278492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 45888823 - 45888942
Alignment:
| Q |
99 |
tgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgg |
198 |
Q |
| |
|
|||||||| || ||| ||| |||| ||||||| ||||| |||||||||| | | || |||||||| | ||||||||||| ||| ||||||| || | | |
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|
| T |
45888823 |
tgcattgcaactatggataatttagctactcatatccaatgccaattatccaagttactatgacacaaaagcattggttaatgtattaccacctattttg |
45888922 |
T |
|
| Q |
199 |
acagacgatgtgtatgctct |
218 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
45888923 |
accgacgatgtgtatgctct |
45888942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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