View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_95 (Length: 218)
Name: NF6870A_low_95
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_95 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 6073565 - 6073745
Alignment:
| Q |
27 |
ggagttcatttgcggaggagtcacggaggcgacagaggtaaacggtgcctatgtcgccggcgcctatacggcggaggagatggaagtcacggaaggtgag |
126 |
Q |
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| T |
6073565 |
ggagttcatttgaggaggagtcacggaggcgacagaggtaaacggtgcctatgtcgccggcgcctatacggcggaggagatggaagtcacggaaggtgag |
6073664 |
T |
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| Q |
127 |
gccggatttgcggatggcggtgtaggcaaagtcgggcgaacggtgaggtttgatggagagagattccggcgaggaggatgg |
207 |
Q |
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| T |
6073665 |
gccggatttgcggatggcggtgtaggcgaagtcggaggaacgatgaggtttgatggagagagattccggcgaggaggatgg |
6073745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 37170181 - 37170044
Alignment:
| Q |
53 |
aggcgacagaggtaaacggtgcctatgtcgccggcgcctatacggcggaggagatggaagtcacggaaggtgaggccggatttg---cggatggcggtgt |
149 |
Q |
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| T |
37170181 |
aggcggcataggtaaacagtaccgatatctccggcgccgatacggcggaggaggtggaagtcacgaaatgtgagagcggacttgcgacggatggcggagt |
37170082 |
T |
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| Q |
150 |
aggcaaagtcgggcgaacggtgaggtttgatggagaga |
187 |
Q |
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| T |
37170081 |
aagcgaagtcggaggagcggtgaggtttgagggagaga |
37170044 |
T |
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