View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6870A_low_97 (Length: 218)
Name: NF6870A_low_97
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_97 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 12122645 - 12122854
Alignment:
| Q |
1 |
tgaagctgtatctattgaacacaaataacaataaaaattgtcaaaaaagctattaaacatatgaaatcaagaattatatgaaaagggaagagaaaaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12122645 |
tgaagctgtatctattgaacacaaataacaataaaaattgtcaaaaaagctattaaacatatgaaatcaagaattatatgaaaagggaagagaaaaacca |
12122744 |
T |
|
| Q |
101 |
gaaaatgataagctgggagaggggaaacacgtgagatagaggacagactatcaaaatagagggacataatgaagattactttagacagaatccataaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12122745 |
gaaaatgataagctgggagaggggaaacacgtgagatagaggacagactatcaaaatagagagacataatgaagattactttagacagaatccataaaac |
12122844 |
T |
|
| Q |
201 |
caataacacc |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
12122845 |
caataacacc |
12122854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14692164 - 14692210
Alignment:
| Q |
1 |
tgaagctgtatctattgaacacaaataacaataaaaattgtcaaaaa |
47 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
14692164 |
tgaagctgtatccattgaacacaaataacaacaaaaattgtcaaaaa |
14692210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University