View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_101 (Length: 264)
Name: NF6871A_low_101
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_101 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 36268687 - 36268938
Alignment:
| Q |
5 |
tgattattgactgctactttcaagcaacctcatacgctacttc-aggcctcgtcattcactccccaacccaaagaaaacatctccgcgactgttgccaat |
103 |
Q |
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| T |
36268687 |
tgattattgattgctactttcaagcaacctcatacgctacttttaagcctcgtcattcactccccaacccaaagaaaacatttccgcgaccgttgccaat |
36268786 |
T |
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| Q |
104 |
ttgttatcagctaactcaaacaaacttctaaaactatctttcaaagatctaccatccaaccaaggatcattccaaaacagagtagaagactcatccccaa |
203 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| |||| |
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| T |
36268787 |
ttgttatcagctaactgaaacaaacttctaaaactatctttcaaagatctacgatccaaccaaggatcatttcaaaacaaagtagaagactcatcaccaa |
36268886 |
T |
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| Q |
204 |
ccttccgacaaatattatcaagcagtcgacctcaatctattagcccaacacc |
255 |
Q |
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| T |
36268887 |
ccttccgacaaatattatcaagcagtcgacctcaatctactagcgcaacacc |
36268938 |
T |
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