View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_102 (Length: 263)
Name: NF6871A_low_102
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_102 |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 48066831 - 48066587
Alignment:
| Q |
7 |
gaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaa |
106 |
Q |
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| T |
48066831 |
gaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtgggacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaa |
48066732 |
T |
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| Q |
107 |
gaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaactgattgcatgggacgttgtgaacgagaatgtccataacc |
206 |
Q |
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| T |
48066731 |
gaattacgagaagcggctgcaaaaagaatgaaatctgtggtttcaagatatagtggacaattaattgcatgggacgttgtgaacgagaatgtccataacc |
48066632 |
T |
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| Q |
207 |
gcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
251 |
Q |
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| T |
48066631 |
gcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
48066587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 48099776 - 48099543
Alignment:
| Q |
7 |
gaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaa |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| || |||| ||| ||||||||| |||||||| ||||||| |||| ||||||||||||| |
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| T |
48099776 |
gaaattcgccaaagaaaatggcatttctgtcagaggtcataccgttttctgggacgatgaaacttttcagcctaaatgggttaagttcctatctcctgaa |
48099677 |
T |
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| Q |
107 |
gaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaactgattgcatgggacgttgtgaacgagaatgtccataacc |
206 |
Q |
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| T |
48099676 |
gaattacgaaaagcggctgcaaaaagaataagatctgtggtttcaaggtatagaggacaactgattgcatgggacgttgtgaatgagaatgtccactacc |
48099577 |
T |
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| Q |
207 |
gcttttttgaggacaaactcggcgaaaatgcctc |
240 |
Q |
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| T |
48099576 |
acttttttgagaacaaactcggcgaaaatgcctc |
48099543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 48062742 - 48062500
Alignment:
| Q |
7 |
gaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaa |
106 |
Q |
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| T |
48062742 |
gaaatttgctaaggaaaatggcatatctgtcagaggtcataacattttgtgggacagtgaaagacgtcaacctgaatgggatttgtccctgtctcctgat |
48062643 |
T |
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| Q |
107 |
gaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaactgattgcatgggacgttgtgaacgagaatgtccataacc |
206 |
Q |
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| T |
48062642 |
gaattacgagaagcagctgcaaaaagaatgaaatccgtggtctcaaggtataaaggacaattgattgcatgggacgtggtaaatgagaatgtccacttcc |
48062543 |
T |
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| Q |
207 |
gcttttttgaggacaaactcggcgaaaatgcctctgcagtata |
249 |
Q |
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| T |
48062542 |
acttttttgaggacaacctcggcaaaaatgcctctgcagtata |
48062500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 48106375 - 48106142
Alignment:
| Q |
9 |
aatttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaaga |
108 |
Q |
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| T |
48106375 |
aatttgctaaagataatggaatttctgtcagaggtcataacattttctgggacgatgaaaaatatcaacctgaatgggttaagtatttatcgcccgatga |
48106276 |
T |
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| Q |
109 |
attacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaactgattgcatgggacgttgtgaacgagaatgtccataaccgc |
208 |
Q |
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| T |
48106275 |
attgcgcaaagccgcgaaaaaaagaatcgaatctgttgttaaaaggtataaaggagaattgattgcatgggatgtggtgaatgaaaatgtccattttcac |
48106176 |
T |
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| Q |
209 |
ttttttgaggacaaactcggcgaaaatgcctctg |
242 |
Q |
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|||| |||||||||||| || |||||||| |||| |
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| T |
48106175 |
ttttatgaggacaaactaggtgaaaatgcatctg |
48106142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 95 - 251
Target Start/End: Original strand, 849 - 1005
Alignment:
| Q |
95 |
ctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaactgattgcatgggacgttgtgaacgaga |
194 |
Q |
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| T |
849 |
ctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgtggtttcaagatatagtggacaattgattgcatgggacgttgtgaacgaga |
948 |
T |
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| Q |
195 |
atgtccataaccgcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
251 |
Q |
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| T |
949 |
atgtccacaaccgatttttttaggacaaactcggagaaaatgcctctgcagtatatt |
1005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 89 - 251
Target Start/End: Complemental strand, 50231389 - 50231227
Alignment:
| Q |
89 |
aagtccctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaactgattgcatgggacgttgtga |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
50231389 |
aagtccctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatttttggtttcaagatatagtggacaattgattgcatgggacgttgtaa |
50231290 |
T |
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| Q |
189 |
acgagaatgtccataaccgcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
251 |
Q |
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| T |
50231289 |
acgagaatgtccacaaccggttttttgaggacaaactcggcaaaaatgcctctgcagtatatt |
50231227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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