View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_104 (Length: 260)
Name: NF6871A_low_104
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_104 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 20073405 - 20073227
Alignment:
| Q |
12 |
atgaagtaagataagtttgaatgtgattgatgatacagcatttttatgattaatgtgaaatttggacacatttgtttagttggctattatgtgtgtataa |
111 |
Q |
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| T |
20073405 |
atgaagtaagataagtttaaatgtgattgatgatacaacatttttatgattaatgtgaaatttggacacatttgtttagttggctattacgtgtgtataa |
20073306 |
T |
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| Q |
112 |
gggagtagatgagattaatgtaatccnnnnnnnnnncttcaaagcctttcatttctattatcggaaactctatttcttg |
190 |
Q |
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| T |
20073305 |
gggagtagatgagattaatgtaatcctcttttttttcttcaaagcctttcatttctatcatcggaaactctatttcttg |
20073227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 20081676 - 20081762
Alignment:
| Q |
87 |
ttagttggctattatgtgtgtataagggagtagatgagattaatgtaatccnnnnnnnnnncttcaaagcctttcatttctattatcg |
174 |
Q |
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| T |
20081676 |
ttagttggctattatgtgtgtataagggagtggatgagattaatgtaatcc-tttgtttttcttcaaagcctttcatttctattatcg |
20081762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 20073213 - 20073174
Alignment:
| Q |
219 |
tttaacaaaaacctattcgtatttagtttttgagatatct |
258 |
Q |
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| T |
20073213 |
tttaacaaaaacctattcgtatttagtttttgagatatct |
20073174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 20083950 - 20083913
Alignment:
| Q |
148 |
cttcaaagcctttcatttctattatcggaaactctatt |
185 |
Q |
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| T |
20083950 |
cttcaaagcctttcatttctattatcggaaactctatt |
20083913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 20103046 - 20102997
Alignment:
| Q |
82 |
tttgtttagttggctattatgtgtgtataagggagtagatgagattaatg |
131 |
Q |
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| T |
20103046 |
tttgtttagtagtccattatgtgtgtataagggagtagatgagattaatg |
20102997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 20095848 - 20095806
Alignment:
| Q |
148 |
cttcaaagcctttcatttctattatcggaaactctatttcttg |
190 |
Q |
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| T |
20095848 |
cttcaaagcctttgatttctattatcggaaactcgatttcttg |
20095806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 20104008 - 20103951
Alignment:
| Q |
19 |
aagataagtttgaatgtgattgatgatacagcatttttatgattaatgtgaaatttggaca |
79 |
Q |
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| T |
20104008 |
aagataagtttaaatgtgattgat---actgcatttttataattaatgtgaaatttggaca |
20103951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 26320391 - 26320445
Alignment:
| Q |
82 |
tttgtttagttggctattatgtgtgtataagggagtagatgagattaatgtaatc |
136 |
Q |
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|||| |||||||| ||||| |||||||||| ||||||||||||||||||||||| |
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| T |
26320391 |
tttgattagttggttattacctgtgtataagagagtagatgagattaatgtaatc |
26320445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 31903412 - 31903344
Alignment:
| Q |
67 |
tgaaatttggacacatttgtttagttggctattatgtgtgtataagggagtagatgagattaatgtaat |
135 |
Q |
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|||||||| |||| |||| |||||| | | |||| |||||||||| ||||| |||||||||||||||| |
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| T |
31903412 |
tgaaattttgacaattttggttagtttgttcttatctgtgtataagagagtatatgagattaatgtaat |
31903344 |
T |
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