View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_107 (Length: 257)
Name: NF6871A_low_107
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_107 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 23 - 252
Target Start/End: Complemental strand, 9192 - 8966
Alignment:
| Q |
23 |
gaaaaagaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
9192 |
gaaaaagaataggaaccggttactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgt-ggatc |
9094 |
T |
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| Q |
123 |
tttatttccacaggtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaattctagct |
222 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||| |
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| T |
9093 |
tttatttccacacgccaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatcttat--tatattactctaataaatactagct |
8996 |
T |
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| Q |
223 |
agtaatatctagtggcacatattcttcgac |
252 |
Q |
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||||||||||||||||||||||| |||||| |
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| T |
8995 |
agtaatatctagtggcacatatttttcgac |
8966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 23 - 252
Target Start/End: Complemental strand, 16420480 - 16420254
Alignment:
| Q |
23 |
gaaaaagaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
16420480 |
gaaaaagaataggaaccggttactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgt-ggatc |
16420382 |
T |
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| Q |
123 |
tttatttccacaggtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaattctagct |
222 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||| |
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| T |
16420381 |
tttatttccacacgccaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatcttat--tatattactctaataaatactagct |
16420284 |
T |
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| Q |
223 |
agtaatatctagtggcacatattcttcgac |
252 |
Q |
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||||||||||||||||||||||| |||||| |
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| T |
16420283 |
agtaatatctagtggcacatatttttcgac |
16420254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 5538285 - 5538515
Alignment:
| Q |
23 |
gaaaaagaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatg |
122 |
Q |
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||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5538285 |
gaaaaggaataggaactggttactaataattctcccactagcttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgt-ggatg |
5538383 |
T |
|
| Q |
123 |
tttatttccacaggtcaatcacttcc-tttgctctatgcttccttttgttttcctactttcttgctaatctgat--tatatattactctaataaattcta |
219 |
Q |
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|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| |
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| T |
5538384 |
tttatttccacacg-caatcacttccttttgctctatgcttccttttgttttcctactttcttgctaatcttattatatatattactctaataaatacta |
5538482 |
T |
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| Q |
220 |
gctagtaatatctagtggcacatattcttcgac |
252 |
Q |
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|||||||||||||| ||||||||||| |||||| |
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| T |
5538483 |
gctagtaatatctaatggcacatatttttcgac |
5538515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 62 - 215
Target Start/End: Complemental strand, 19932449 - 19932297
Alignment:
| Q |
62 |
aacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatgtttatttccacaggtcaatcacttcctttgctctatgct |
161 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||| |
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| T |
19932449 |
aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtgg-atgtttatttccactagtcaatcagttccttttctctatgct |
19932351 |
T |
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| Q |
162 |
tccttttgttttcctactttcttgctaatctgattatatattactctaataaat |
215 |
Q |
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|||||||| ||||||||||| |||||||||| ||||||||||||| |||||||| |
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| T |
19932350 |
tccttttgctttcctactttattgctaatcttattatatattactttaataaat |
19932297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 62 - 215
Target Start/End: Complemental strand, 18901668 - 18901509
Alignment:
| Q |
62 |
aacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggg------atgtttatttccacaggtcaatcacttcctttgctc |
155 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| |
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| T |
18901668 |
aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttaatgtttatttccaccagtcaatcagttccttttctc |
18901569 |
T |
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| Q |
156 |
tatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaat |
215 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
18901568 |
tatgcttccttttgctttcctactttcttgctaatcttattatatattactttaataaat |
18901509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 51784718 - 51784772
Alignment:
| Q |
62 |
aacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgt |
116 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
51784718 |
aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgt |
51784772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 18901487 - 18901445
Alignment:
| Q |
203 |
tactctaataaattctagctagtaatatctagtggcacatatt |
245 |
Q |
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|
||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
18901487 |
tactctaataaatactagctagtaatatctagtgtcacatatt |
18901445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 51784794 - 51784832
Alignment:
| Q |
177 |
actttcttgctaatctgattatatattactctaataaat |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||| |
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| T |
51784794 |
actttcttgctaatcttattatatattactttaataaat |
51784832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 51784859 - 51784892
Alignment:
| Q |
212 |
aaattctagctagtaatatctagtggcacatatt |
245 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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| T |
51784859 |
aaatactagctagtaatatctagtggcacatatt |
51784892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 37940333 - 37940512
Alignment:
| Q |
23 |
gaaaaagaataggaaccggttacta--ataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggga |
120 |
Q |
| |
|
|||||||||||||||||||||| || |||| | ||| |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||| |
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| T |
37940333 |
gaaaaagaataggaaccggttattataataacattgtcactaacttatttcctaaaaatatggaacatagtggaaaatgagattgggaagaaacgt-gga |
37940431 |
T |
|
| Q |
121 |
tgtttatttccacaggtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatata |
201 |
Q |
| |
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||||||||||||| || ||||| ||||||| ||||||||| ||||| || ||||||||||||||||||| |||||||| |
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| T |
37940432 |
tgtttatttccactagttaatcagttcctttttcctatgcttctttttgcttacctactttcttgctaatcttattatata |
37940512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 37940550 - 37940592
Alignment:
| Q |
203 |
tactctaataaattctagctagtaatatctagtggcacatatt |
245 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
37940550 |
tactctaataaatactagctagtaatatctagtggcacatatt |
37940592 |
T |
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