View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_111 (Length: 254)
Name: NF6871A_low_111
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_111 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 36724252 - 36724372
Alignment:
| Q |
134 |
actgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgt |
233 |
Q |
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| T |
36724252 |
actgtctacaagcatctataatgcatctaaattcactactatcttatatgcttgttctaagagcatccacatccttcacagagtctagagaaaaatctgt |
36724351 |
T |
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| Q |
234 |
attatcaaattgaaggtctga |
254 |
Q |
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| T |
36724352 |
attatcaaattgaaggtctga |
36724372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 36723764 - 36723895
Alignment:
| Q |
16 |
atcatcataggtgtgggagttagtattatgtgggactatctgagctaactcatgagcaacctcattagcctgactttattaaactcaatttgagagtttt |
115 |
Q |
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| T |
36723764 |
atcatcataggtgtgagagctagtattatgtgggactatctgagctaactcgtgagcaatcccattagtctgactctattaaactcaacttaagagtttt |
36723863 |
T |
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| Q |
116 |
gaaatctactatgaaataactgtctacaagca |
147 |
Q |
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| T |
36723864 |
gaaatctactatgaaataactgtctacaagca |
36723895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 250
Target Start/End: Complemental strand, 712314 - 712156
Alignment:
| Q |
92 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
191 |
Q |
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| T |
712314 |
tattaaactcaacatgagagttttaaaatctattttgaaacaactatctacatgcaagtataatacatccaaattcacaactatcttctacacatgttct |
712215 |
T |
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| Q |
192 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggt |
250 |
Q |
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| T |
712214 |
aaaagcatccacaaccttcttagagtctagagcaaaatctacattatcaaattgaaggt |
712156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 717603 - 717366
Alignment:
| Q |
14 |
acatcatcataggtgtgggagttagtattatgtgggactatctgagctaactcatgagcaacctcattagcctgactt-tattaaactcaatttgagagt |
112 |
Q |
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| T |
717603 |
acatcatcataagtgagagatctagcattatgtggggctatatgagctaactcgtaagtgatcccattagcttgtctcctattaaactcaacatgagagt |
717504 |
T |
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| Q |
113 |
tttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcac |
212 |
Q |
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| T |
717503 |
tttgaaatctactttggaataattgtctacattcaactataatacatccaaattcactactatctcctacacatcttctaaaagcatcaacaaccttctt |
717404 |
T |
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| Q |
213 |
aaagtctagagaaaaatctgtattatcaaattgaaggt |
250 |
Q |
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| T |
717403 |
agagtctagagctaaatctacattatcaaattgaaggt |
717366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 250
Target Start/End: Complemental strand, 14541248 - 14541090
Alignment:
| Q |
92 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
191 |
Q |
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||||||||||||| ||||||||| ||| |||| ||||| | ||||||||| |||||||||| |||||||||| || |||||||| || |||||| |
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| T |
14541248 |
tattaaactcaatacgagagtttttaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactattatcttctacatatgttct |
14541149 |
T |
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| Q |
192 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggt |
250 |
Q |
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| T |
14541148 |
aaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggt |
14541090 |
T |
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