View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_113 (Length: 253)
Name: NF6871A_low_113
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_113 |
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| [»] chr2 (5 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 43011259 - 43011506
Alignment:
| Q |
6 |
gtaattatttctgttcaaggggttgaatgtgtgatagatgttatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaa |
105 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43011259 |
gtaattatttctgttcaaggggttgaatgggagatagatgttatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaa |
43011358 |
T |
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| Q |
106 |
ttggatgtacatgcattgattgggttgagnnnnnnntgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactcc |
205 |
Q |
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| T |
43011359 |
ttggatgtacttgcatcgattgggttgagaaaaaaatgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactcc |
43011458 |
T |
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| Q |
206 |
attacaaaactatgttgatgaaaatcattttggccagttgcattgtga |
253 |
Q |
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| T |
43011459 |
attacaaaactatgttgatgaaaatcattttggccagttgcattgtga |
43011506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 43013556 - 43013803
Alignment:
| Q |
6 |
gtaattatttctgttcaaggggttgaatgtgtgatagatgttatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaa |
105 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43013556 |
gtaattatttctgttcaaggggttgaatgggagatagatgttatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaa |
43013655 |
T |
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| Q |
106 |
ttggatgtacatgcattgattgggttgagnnnnnnntgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactcc |
205 |
Q |
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| T |
43013656 |
ttggatgtacttgcatcgattgggttgagaaaaaaatgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactcc |
43013755 |
T |
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| Q |
206 |
attacaaaactatgttgatgaaaatcattttggccagttgcattgtga |
253 |
Q |
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| T |
43013756 |
attacaaaactatgttgatgaaaatcattttggccagttgcattgtga |
43013803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 25203229 - 25202985
Alignment:
| Q |
9 |
attatttctgttcaaggggttgaatgtgtgatagatgttatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaattg |
108 |
Q |
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||||||||| |||||| |||| |||| | ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25203229 |
attatttctcttcaagtggttaaatgggagatagatgttatgctttttgagtagggcggttatgatctagtattggggatggcatgactgacacaaattg |
25203130 |
T |
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| Q |
109 |
gatgtacatgcattgattgggttgagnnnnnnntgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccatt |
208 |
Q |
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||||||| ||||| |||||||||||| || ||||||||||||| || |||||||| ||||||| ||| |||||||||||||||||||||||||| |
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| T |
25203129 |
gatgtacttgcatcgattgggttgagaaaaaaatgtgtttcgactatcagggtgaatggattgagatcataggtattcgtactagagagtgcactccatt |
25203030 |
T |
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| Q |
209 |
acaaaactatgttgatgaaaatcattttggccagttgcattgtga |
253 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25203029 |
acaaaactatgttgatgaaaatcattttggttagttgcattgtga |
25202985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 35075313 - 35075411
Alignment:
| Q |
17 |
tgttcaaggggttgaatgtgtgatagatgttatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaattggatgtac |
115 |
Q |
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| T |
35075313 |
tgttcaaggggttgaatgggagatagatcttaagctttttgagttgggcggttatgatctagtattggggatggcatggctgacacaaattggatgtac |
35075411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 35075408 - 35075474
Alignment:
| Q |
187 |
gtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtga |
253 |
Q |
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| T |
35075408 |
gtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggtcagttgcattgtga |
35075474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 253
Target Start/End: Complemental strand, 25676109 - 25675862
Alignment:
| Q |
6 |
gtaattatttctgttcaaggggttgaatgtgtgatagatgttatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaa |
105 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25676109 |
gtaattatttctgttcaaggggttgaatgggagatagatgttatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaa |
25676010 |
T |
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| Q |
106 |
ttggatgtacatgcattgattgggttgagnnnnnnntgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactcc |
205 |
Q |
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|||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25676009 |
ttggatgtacttgcatcgattgggttgagaaaaaaatgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactcc |
25675910 |
T |
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| Q |
206 |
attacaaaactatgttgatgaaaatcattttggccagttgcattgtga |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25675909 |
attacaaaactatgttgatgaaaatcattttggccagttgcattgtga |
25675862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 15090418 - 15090169
Alignment:
| Q |
9 |
attatttctgttcaaggggttgaatgtgtgatagatgttatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaattg |
108 |
Q |
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|||||||||||||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15090418 |
attatttctgttcaaggggttgaatgggagatagatattatgctttttgagttgggcggttatgatctagtattggggatggcatggctgacacaaattg |
15090319 |
T |
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| Q |
109 |
gatgtacatgcattgattgggttgag-------nnnnnnntgcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgca |
201 |
Q |
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||||||| ||||| |||||||||||| | ||||||||||||| || |||||||| ||||||||||||||||||||| |||||||| |
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| T |
15090318 |
gatgtacttgcatcgattgggttgagaaaaaaaaaaaaaaagtgtttcgactatcagggtgaatggattgagatcagaggaattcgtact--agagtgca |
15090221 |
T |
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| Q |
202 |
ctccattacaaaactatgttgatgaaaatcattttggccagttgcattgtga |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15090220 |
atccattacaaaactatgttgatgaaaatcattttggccagttgcattgtga |
15090169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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