View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_114 (Length: 253)

Name: NF6871A_low_114
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_114
NF6871A_low_114
[»] scaffold0038 (3 HSPs)
scaffold0038 (10-253)||(35477-35720)
scaffold0038 (10-253)||(43707-43950)
scaffold0038 (13-253)||(28203-28443)
[»] chr6 (38 HSPs)
chr6 (10-253)||(28235315-28235558)
chr6 (18-253)||(28296929-28297164)
chr6 (18-253)||(28514909-28515144)
chr6 (10-253)||(28326228-28326471)
chr6 (10-253)||(28503864-28504107)
chr6 (10-253)||(28243545-28243788)
chr6 (10-253)||(28181867-28182111)
chr6 (13-253)||(28227705-28227945)
chr6 (10-253)||(28186143-28186386)
chr6 (11-216)||(29843213-29843418)
chr6 (24-247)||(28097638-28097861)
chr6 (27-220)||(29826753-29826946)
chr6 (10-128)||(26849462-26849580)
chr6 (27-253)||(28140302-28140528)
chr6 (40-220)||(26724348-26724528)
chr6 (28-91)||(26056690-26056753)
chr6 (28-91)||(26076660-26076723)
chr6 (28-91)||(27705755-27705818)
chr6 (175-253)||(26884985-26885063)
chr6 (28-125)||(26937797-26937894)
chr6 (28-88)||(27530655-27530715)
chr6 (19-91)||(27697937-27698009)
chr6 (28-91)||(25511660-25511723)
chr6 (28-91)||(25580490-25580553)
chr6 (28-91)||(26143636-26143699)
chr6 (46-133)||(26812314-26812401)
chr6 (10-133)||(26975701-26975824)
chr6 (143-217)||(25483942-25484016)
chr6 (175-217)||(26656880-26656922)
chr6 (175-217)||(26762851-26762893)
chr6 (19-73)||(27337464-27337518)
chr6 (19-73)||(27398204-27398258)
chr6 (28-89)||(27426965-27427026)
chr6 (164-253)||(27530490-27530579)
chr6 (141-217)||(25539424-25539500)
chr6 (141-217)||(26056803-26056879)
chr6 (31-91)||(26803217-26803277)
chr6 (28-116)||(31285327-31285415)
[»] scaffold0019 (1 HSPs)
scaffold0019 (15-253)||(57483-57721)
[»] chr5 (1 HSPs)
chr5 (27-253)||(16691634-16691860)
[»] chr2 (1 HSPs)
chr2 (15-253)||(3280414-3280652)
[»] chr1 (4 HSPs)
chr1 (28-253)||(28126864-28127089)
chr1 (28-88)||(28163729-28163789)
chr1 (27-253)||(26136655-26136881)
chr1 (28-110)||(267672-267754)
[»] chr4 (2 HSPs)
chr4 (10-253)||(5090139-5090385)
chr4 (28-89)||(18074529-18074590)
[»] scaffold0003 (1 HSPs)
scaffold0003 (28-89)||(60337-60398)


Alignment Details
Target: scaffold0038 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 35477 - 35720
Alignment:
Q  10 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattc 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35477 ctggtggaattggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattc 35576  T
Q  110 atctaaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcata 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35577 atctaaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcata 35676  T
Q  210 aagcaaaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35677 aagcaaaggcttcaccgaaagaaggttctgttgattctagatga 35720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 43707 - 43950
Alignment:
Q  10 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  43707 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaattc 43806  T
Q  110 atctaaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcata 209  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||| |||    
T  43807 aactaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacattgagttgggagatatcaacgagggaattccaataata 43906  T
Q  210 aagcaaaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    ||| |||||||||||||||| ||||||||| | ||||| |||||    
T  43907 aagaaaaggcttcaccgaaacaaggttctgctaattctcgatga 43950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 28203 - 28443
Alignment:
Q  13 gtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatc 112  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  28203 gtggaatgggaaagacaacacttgcaagggcagtttataattttatagccgatcaatttgatggtttgtgttttcttcacgatgtaagggaaaattcagc 28302  T
Q  113 taaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaag 212  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| || |||||    
T  28303 taaatatggtttagagcatctataggtaaagatcctttccaaattagttgaattggaagttaagttaggagatgtcaacgagggaattccagtcttaaag 28402  T
Q  213 caaaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    |||||||||||||||||||| ||||| |||||||| |||||    
T  28403 caaaggcttcaccgaaagaaagttctattgattctcgatga 28443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 28235315 - 28235558
Alignment:
Q  10 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattc 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28235315 ctggtggaattggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattc 28235414  T
Q  110 atctaaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcata 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28235415 atctaaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcata 28235514  T
Q  210 aagcaaaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28235515 aagcaaaggcttcaccgaaagaaggttctgttgattctagatga 28235558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 28297164 - 28296929
Alignment:
Q  18 atgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaat 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||    
T  28297164 atgggaaagacaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacaatgtaagggaaaattcagctaaat 28297065  T
Q  118 atggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaag 217  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  28297064 atggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacgttaagttaggagatgtcaacgagggaattccaatcataaagcaaag 28296965  T
Q  218 gcttcaccgaaagaaggttctgttgattctagatga 253  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28296964 gcttcaccgaaagaaggttttgttgattctagatga 28296929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 28514909 - 28515144
Alignment:
Q  18 atgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaat 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||    
T  28514909 atgggaaagacaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacaatgtaagggaaaattcagctaaat 28515008  T
Q  118 atggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaag 217  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  28515009 atggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacgttaagttaggagatgtcaacgagggaattccaatcataaagcaaag 28515108  T
Q  218 gcttcaccgaaagaaggttctgttgattctagatga 253  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28515109 gcttcaccgaaagaaggttttgttgattctagatga 28515144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 28326228 - 28326471
Alignment:
Q  10 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  |||| | ||||||    
T  28326228 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttaacgaaataagtgcaaattc 28326327  T
Q  110 atctaaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcata 209  Q
    | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||    
T  28326328 agctaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattgtacgttaagttaggagatgtcaatgatggagttccaatcata 28326427  T
Q  210 aagcaaaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  28326428 aagcaaaggcttcaccgaaagaaggttctgttgattctcgatga 28326471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 28503864 - 28504107
Alignment:
Q  10 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  |||| | ||||||    
T  28503864 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttaacgaaataagtgcaaattc 28503963  T
Q  110 atctaaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcata 209  Q
    | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||    
T  28503964 agctaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattgtacgttaagttaggagatgtcaatgatggagttccaatcata 28504063  T
Q  210 aagcaaaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  28504064 aagcaaaggcttcaccgaaagaaggttctgttgattctcgatga 28504107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 28243545 - 28243788
Alignment:
Q  10 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  28243545 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaattc 28243644  T
Q  110 atctaaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcata 209  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||| |||    
T  28243645 aactaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacattgagttgggagatatcaacgagggaattccaataata 28243744  T
Q  210 aagcaaaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    ||| |||||||||||||||| ||||||||| | ||||| |||||    
T  28243745 aagaaaaggcttcaccgaaacaaggttctgctaattctcgatga 28243788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 28181867 - 28182111
Alignment:
Q  10 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattc 109  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||    
T  28181867 ctggaggaatgggaaagacgacgcttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttaacgacataagggcaaattc 28181966  T
Q  110 atctaaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcat- 208  Q
    | ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||     
T  28181967 agctaaatatggtttagagcatctacaggaaaatctcctttccaaattagctgaattggacgttaagttaggagatgtcaacgagggaactccaatcata 28182066  T
Q  209 aaagcaaaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  28182067 aaagcaaaggcttcaccgaaagaaggttctattgattctagatga 28182111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 28227705 - 28227945
Alignment:
Q  13 gtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatc 112  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  28227705 gtggaatgggaaagacaacacttgcaagggcagtttataattttatagccgatcaatttgatggtttgtgttttcttcacgatgtaagggaaaattcagc 28227804  T
Q  113 taaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaag 212  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| || |||||    
T  28227805 taaatatggtttagagcatctataggtaaagatcctttccaaattagttgaattggaagttaagttaggagatgtcaacgagggaattccagtcttaaag 28227904  T
Q  213 caaaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    |||||||||||||||||||| ||||| |||||||| |||||    
T  28227905 caaaggcttcaccgaaagaaagttctattgattctcgatga 28227945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 28186143 - 28186386
Alignment:
Q  10 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattc 109  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  28186143 ctggaggaatgggaaagacgacacttgcaagagcagtttataattccctagctgatcaatttgatgatttgtgttttcttcacgatgtaaggggaaattc 28186242  T
Q  110 atctaaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcata 209  Q
    | ||||||||||||| |||||||| ||||||||||||||||| ||||||||  || ||||| || |||||||||||||| | ||||||||||||||||||    
T  28186243 agctaaatatggtttggagcatctgcagggaaagctcctttctaaattagtcaaactggacattaagttaggagatgtctacgagggaattccaatcata 28186342  T
Q  210 aagcaaaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
     || |||||||||||| |||||||||| |||||||||| |||||    
T  28186343 gagaaaaggcttcaccaaaagaaggttttgttgattctcgatga 28186386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 29843418 - 29843213
Alignment:
Q  11 tggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattca 110  Q
    ||||||| |||| || |||||||||||  ||||| |||||||||  || |||||| |||||||  |||||||||||||||||||||  || |||| ||||    
T  29843418 tggtggattgggtaaaacaacacttgctcgagcaatttataatttgattgctgataaatttgaatgtttgtgttttcttcacgacgggagagaaagttca 29843319  T
Q  111 tctaaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataa 210  Q
     ||||| |||| ||||||||||| || |  ||||| |||||||||  |||||| |||||| || || |||||||||| ||||| ||||||||||| ||||    
T  29843318 gctaaacatggcttagagcatctccaagagaagcttctttccaaaacagttgatttggacattaagctaggagatgttaatgaaggaattccaataataa 29843219  T
Q  211 agcaaa 216  Q
    ||||||    
T  29843218 agcaaa 29843213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 28097861 - 28097638
Alignment:
Q  24 aagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtt 123  Q
    |||||||||||||||| ||| |||||||||| ||| |||| |||||||||  || | ||||| |||||| | || || ||||||||| | ||| |||| |    
T  28097861 aagacaacacttgcaaaagcggtttataatttcattgctggtcaatttgaatgtgtctgtttccttcacaatgtgagagaaaattcagcaaaacatggct 28097762  T
Q  124 tagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggcttca 223  Q
    |||||||||| ||   | |  | ||||||||  | |||| ||||||| || |||||| ||||   | ||||||||||||||||||||| |||||||| ||    
T  28097761 tagagcatctccaaaaagatttgctttccaagattgttggattggacattaagttagcagatactagtgagggaattccaatcataaaacaaaggctaca 28097662  T
Q  224 ccgaaagaaggttctgttgattct 247  Q
     | |||||||||||| ||||||||    
T  28097661 acaaaagaaggttctattgattct 28097638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 220
Target Start/End: Original strand, 29826753 - 29826946
Alignment:
Q  27 acaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttag 126  Q
    |||||||||||  ||||| ||||||||   || | |||| |||||||  | |||||||||||||| ||| | || |||| |||| ||||| |||| ||||    
T  29826753 acaacacttgctcgagcaatttataatatgattggtgataaatttgaatgcttgtgttttcttcatgacttgagagaaagttcagctaaacatggcttag 29826852  T
Q  127 agcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggct 220  Q
    | ||||| ||    ||||| |||||||||  |||||||||||||  | || |||||||||| || || ||||||||||| ||||||||||||||    
T  29826853 aacatctccaacagaagcttctttccaaaacagttgaattggacactaagctaggagatgttaacgaaggaattccaataataaagcaaaggct 29826946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 26849462 - 26849580
Alignment:
Q  10 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattc 109  Q
    |||| ||||||||||| |||||||||||   ||||||||||||||| || ||||||||||||||  ||  |||||| |||||||| || || ||||||||    
T  26849462 ctggaggaatgggaaaaacaacacttgctcaagcagtttataattcgattgctgatcaatttgaatgtaagtgtttccttcacgatgtgagagaaaattc 26849561  T
Q  110 atctaaatatggtttagag 128  Q
    |  |||| |||| ||||||    
T  26849562 acttaaacatggcttagag 26849580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 253
Target Start/End: Original strand, 28140302 - 28140528
Alignment:
Q  27 acaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttag 126  Q
    ||||||||||||  |||| |||||||||  || || |||||||||||  ||||||||||||||||  | || || |||| |||| ||||| |||| ||||    
T  28140302 acaacacttgcacaagcaatttataattttattgccgatcaatttgaatgtttgtgttttcttcataatgtgagagaaatttcagctaaacatggcttag 28140401  T
Q  127 agcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccg 226  Q
    |  |||| || | ||| |||||||| |||  |||||  |||  |||| |||| ||| |||| | ||| ||||| ||||| |||||| ||||||| |  |     
T  28140402 aagatctccaagaaaaactcctttctaaaacagttggtttgagcgttaagtttggacatgtaagtgaaggaataccaataataaaggaaaggctacgact 28140501  T
Q  227 aaagaaggttctgttgattctagatga 253  Q
    |||||||||||| |||||||| |||||    
T  28140502 aaagaaggttcttttgattctcgatga 28140528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 26724348 - 26724528
Alignment:
Q  40 gagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttagagcatctacaggg 139  Q
    ||||||||||| |||  || |||||||||||||| || |||||||| |||||| | || || |||||||||  ||||||||| |||||  |||| || |     
T  26724348 gagcagtttatgatttgattgctgatcaatttgaagggttgtgtttccttcacaatgtgagagaaaattcaattaaatatggcttagaatatctccaaga 26724447  T
Q  140 aaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggct 220  Q
     |||||||| ||||||||| | | ||||||  || |||| |||||||| | ||| || ||| |||||||||| || |||||    
T  26724448 gaagctcctctccaaattaatcggattggaatttaagttcggagatgttagtgaagggatttcaatcataaaacacaggct 26724528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 26056690 - 26056753
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttca 91  Q
    |||||||||||| |||||||| |||||| || |||||||||||||| ||| | |||||||||||    
T  26056690 caacacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttca 26056753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 26076660 - 26076723
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttca 91  Q
    |||||||||||| |||||||| |||||| || |||||||||||||| ||| | |||||||||||    
T  26076660 caacacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttca 26076723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 27705818 - 27705755
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttca 91  Q
    ||||||||||||||||| |||||||||   | |||||||||||||| ||||| |||||||||||    
T  27705818 caacacttgcaagagcaatttataattttgttgctgatcaatttgaaggtttatgttttcttca 27705755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 26884985 - 26885063
Alignment:
Q  175 agttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    ||||||||||||| | ||||||||||||| |||||||| |||| || ||  |||||||| |||| |||||||| |||||    
T  26884985 agttaggagatgttagtgagggaattccactcataaaggaaagactacatagaaagaagattcttttgattcttgatga 26885063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 26937797 - 26937894
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggttta 125  Q
    ||||||||||| ||||| |||||||||  || | ||||||||||||  ||||||||||||||||  | ||| | |||||| || ||||| ||||||||    
T  26937797 caacacttgcacgagcaatttataatttgattggtgatcaatttgaaagtttgtgttttcttcataatgtacgagaaaatgcaactaaacatggttta 26937894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 27530715 - 27530655
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttct 88  Q
    |||||||||||| |||| ||||||||| ||| |||||||||||||| | ||| ||||||||    
T  27530715 caacacttgcaaaagcaatttataatttcattgctgatcaatttgaagttttatgttttct 27530655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 27698009 - 27697937
Alignment:
Q  19 tgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttca 91  Q
    |||||||  ||||||||||||||||| | |||||||   | |||||||||||||| ||||| |||||||||||    
T  27698009 tgggaaaatcaacacttgcaagagcaatctataatttggttgctgatcaatttgaaggtttatgttttcttca 27697937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 25511660 - 25511723
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttca 91  Q
    |||||||||||| |||||||| |||||| || ||||||||||||||  || | |||||||||||    
T  25511660 caacacttgcaaaagcagtttttaattctattgctgatcaatttgaaagtgtatgttttcttca 25511723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 25580490 - 25580553
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttca 91  Q
    |||||||||||| ||||||||||||||   | |||||||||||||| ||| | |||||||||||    
T  25580490 caacacttgcaaaagcagtttataattttgttgctgatcaatttgaaggtgtatgttttcttca 25580553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 26143636 - 26143699
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttca 91  Q
    |||||||||||| ||||||||||||||   | |||||||||||||| ||| | |||||||||||    
T  26143636 caacacttgcaaaagcagtttataattttgttgctgatcaatttgaaggtgtatgttttcttca 26143699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 26812314 - 26812401
Alignment:
Q  46 tttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttagagcatct 133  Q
    |||||||||  || |||||||||||||||||||||||||| ||||||   ||  | |||||||||  ||||||||| ||||| |||||    
T  26812314 tttataatttgattgctgatcaatttgatggtttgtgtttccttcacagtgtgcgagaaaattcaattaaatatggcttagaacatct 26812401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 26975701 - 26975824
Alignment:
Q  10 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattc 109  Q
    |||| |||||||| ||||||||||||||   ||||||||||||||  || ||| ||||||||||  ||   ||||| |||||||| || || ||||||||    
T  26975701 ctgggggaatgggtaagacaacacttgctcaagcagtttataatttgattgctaatcaatttgaatgtaactgtttccttcacgatgtgagagaaaattc 26975800  T
Q  110 atctaaatatggtttagagcatct 133  Q
    |  |||| |||| |||||| ||||    
T  26975801 agttaaacatggcttagagtatct 26975824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 25483942 - 25484016
Alignment:
Q  143 gctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaag 217  Q
    ||||||||| ||| ||||| |||| |||| | |||||| |||||| | ||||||||| |||||||||||| ||||    
T  25483942 gctcctttcaaaaatagttaaatttgacggtaagttagaagatgttagtgagggaataccaatcataaaggaaag 25484016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 26656880 - 26656922
Alignment:
Q  175 agttaggagatgtcaatgagggaattccaatcataaagcaaag 217  Q
    ||||||||||||| | |||||||||||||||||||||| ||||    
T  26656880 agttaggagatgttagtgagggaattccaatcataaaggaaag 26656922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 26762851 - 26762893
Alignment:
Q  175 agttaggagatgtcaatgagggaattccaatcataaagcaaag 217  Q
    ||||||||||||| | |||||||||||||||||||||| ||||    
T  26762851 agttaggagatgttagtgagggaattccaatcataaaggaaag 26762893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 27337518 - 27337464
Alignment:
Q  19 tgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttga 73  Q
    |||||||  |||||||||||| |||| ||||||||| ||| ||||||||||||||    
T  27337518 tgggaaaatcaacacttgcaaaagcaatttataatttcattgctgatcaatttga 27337464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 27398258 - 27398204
Alignment:
Q  19 tgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttga 73  Q
    |||||||  |||||||||||| |||| ||||||||| ||| ||||||||||||||    
T  27398258 tgggaaaatcaacacttgcaaaagcaatttataatttcattgctgatcaatttga 27398204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 27427026 - 27426965
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttctt 89  Q
    ||||||||||||||||| | |||||||   | |||||||||||||| ||||| |||||||||    
T  27427026 caacacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttctt 27426965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 27530579 - 27530490
Alignment:
Q  164 attggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    ||||||| || ||||||||| ||| | | |||||||||||||||| |||||||||||     |||||||| |||| |||||||| |||||    
T  27530579 attggacattaagttaggaggtgttagtcagggaattccaatcattaagcaaaggctatgtagaaagaagattcttttgattcttgatga 27530490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 25539424 - 25539500
Alignment:
Q  141 aagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaag 217  Q
    ||||||||||| ||| ||||| |||| |||| | |||||| |||||| | |||||||||  ||||||||||| ||||    
T  25539424 aagctcctttcaaaaatagttaaatttgacggtaagttagaagatgttagtgagggaataacaatcataaaggaaag 25539500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 26056803 - 26056879
Alignment:
Q  141 aagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaag 217  Q
    ||||||||||| ||| ||||| |||| |||| | |||||| |||||| | ||||||||| ||||| |||||| ||||    
T  26056803 aagctcctttcaaaaatagttaaatttgacggtcagttagaagatgttagtgagggaataccaattataaaggaaag 26056879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 26803217 - 26803277
Alignment:
Q  31 cacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttca 91  Q
    |||||||||||||| | |||||||   | |||||||||||||| ||||| |||||||||||    
T  26803217 cacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttcttca 26803277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 31285327 - 31285415
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaa 116  Q
    ||||||||||||||||| | |||||||  || | |||||||||||| || || ||||||||||| || || || || |||||| |||||    
T  31285327 caacacttgcaagagcaatctataattttattggtgatcaatttgacggattatgttttcttcatgatgtgagagagaattcagctaaa 31285415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 57721 - 57483
Alignment:
Q  15 ggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatcta 114  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  57721 ggaatgggaaagacaacacttgctagagcagtttttaattccatagccgatcaatttgatgatttgtgttttcttcacgacgtaagggaaaattcagcta 57622  T
Q  115 aatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagca 214  Q
    ||||||||||||||||||| |||||||| || |||||||||||||||||||||||| || |||||| ||||||||| |||||||||||||||||||||||    
T  57621 aatatggtttagagcatctgcagggaaaacttctttccaaattagttgaattggacattaagttagtagatgtcaacgagggaattccaatcataaagca 57522  T
Q  215 aaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  57521 aaggcttcaccgaaagaaggttttgttgattctcgatga 57483  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 253
Target Start/End: Original strand, 16691634 - 16691860
Alignment:
Q  27 acaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttag 126  Q
    |||||||||||  ||||| |||||||||  || ||||||||||||||  |||||||||||||||| ||||| || ||||||||||||||| |||| ||||    
T  16691634 acaacacttgctcgagcaatttataatttgattgctgatcaatttgaatgtttgtgttttcttcatgacgtgagagaaaattcatctaaacatggcttag 16691733  T
Q  127 agcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccg 226  Q
    | ||||| || | || |||||||||||||    ||| ||| ||| || |||||||| |||| | ||| ||||||||||| ||||| |||||||| || |     
T  16691734 aacatcttcaagaaaggctcctttccaaaaccattggattagacattaagttaggacatgttagtgaaggaattccaataataaaacaaaggctacaaca 16691833  T
Q  227 aaagaaggttctgttgattctagatga 253  Q
    ||| |||||||| |||||||| |||||    
T  16691834 aaaaaaggttcttttgattctcgatga 16691860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 3280414 - 3280652
Alignment:
Q  15 ggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatcta 114  Q
    |||||||| |||||||| |||||||||||||||||||||| ||| ||| ||||||||||  || | |||||||||||| | || || ||||||||| | |    
T  3280414 ggaatgggtaagacaactcttgcaagagcagtttataatttcattgctaatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaa 3280513  T
Q  115 aatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagca 214  Q
    || ||||| |||||||||| ||     |  | |||||||||   |||| ||||||| || |||||||||||   | ||||||||||||||||||||||||    
T  3280514 aacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagca 3280613  T
Q  215 aaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    |||||| ||||| || |||||||| ||| |||| |||||    
T  3280614 aaggctacaccggaaaaaggttctattggttcttgatga 3280652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 28127089 - 28126864
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttaga 127  Q
    |||||||||||| |||| ||||||||| ||| |||||||||||||| ||||| ||||||||  | || || || || | |||| ||  ||||  |||  |    
T  28127089 caacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggtttatgttttctagaagatgtgagagagatttcaactccatataatttgaa 28126990  T
Q  128 gcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccga 227  Q
     ||||| || | |||||||||||  |||  ||||| ||||||| || ||||||||| ||| | |||||||||| |||||||||| ||||||||   | ||    
T  28126989 acatctccaagaaaagctccttttgaaaacagttggattggacattaagttaggaggtgttagtgagggaattgcaatcataaaacaaaggctatgcaga 28126890  T
Q  228 aagaaggttctgttgattctagatga 253  Q
    |||||| |||| |||||||| |||||    
T  28126889 aagaagattcttttgattcttgatga 28126864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 28163789 - 28163729
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttct 88  Q
    |||||||||||| |||| ||||||||| ||| |||||||||||||| ||||| ||||||||    
T  28163789 caacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggtttatgttttct 28163729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 253
Target Start/End: Original strand, 26136655 - 26136881
Alignment:
Q  27 acaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttag 126  Q
    ||||||||| |  |||||||||||||||  || || ||||||||||| || ||||| || |||||| | ||  | |||||||||  ||||||||| ||||    
T  26136655 acaacacttactcgagcagtttataatttgattgcggatcaatttgaaggattgtgcttccttcacaatgtgcgagaaaattcagttaaatatggcttag 26136754  T
Q  127 agcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccg 226  Q
    |  |||| || |   ||||||| ||||||| | | | ||||||  || |||||||| |||| | | | |||||||||||||||||  ||||||| || |     
T  26136755 aatatctccaagagcagctcctctccaaatcaatcggattggagattaagttaggacatgttagtaaaggaattccaatcataaaagaaaggctacatca 26136854  T
Q  227 aaagaaggttctgttgattctagatga 253  Q
    ||||||  || |||||||||| |||||    
T  26136855 aaagaaaattttgttgattctcgatga 26136881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 267754 - 267672
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattca 110  Q
    |||| |||||||||||| | |||||||  || |||||||||||||| || || ||||||||||| || || || |||||||||    
T  267754 caacccttgcaagagcaatctataattttattgctgatcaatttgaaggattatgttttcttcatgatgtgagagaaaattca 267672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 5090385 - 5090139
Alignment:
Q  10 ctggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattc 109  Q
    |||| |||||||| || || ||||||| || |||| |||| |||| ||| ||| ||||||||||  || | |||||||||| | | || || ||||||||    
T  5090385 ctggaggaatgggtaaaaccacacttggaaaagcaatttacaatttcattgctcatcaatttgaatgtctttgttttcttcccaatgtgagagaaaattc 5090286  T
Q  110 atctaaat---atggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatc 206  Q
    | |||||    ||||||||||| |||| ||| | ||| ||||||  |||  | ||| ||||||  ||  ||| |||||| ||| ||||||||||||||||    
T  5090285 aactaaagtggatggtttagagtatcttcagagtaaggtcctttttaaaacaattggattggaaattaggtttggagatatcagtgagggaattccaatc 5090186  T
Q  207 ataaagcaaaggcttcaccgaaagaaggttctgttgattctagatga 253  Q
    |||||| ||||||| ||  ||||||| ||||| |||||||| |||||    
T  5090185 ataaagaaaaggctacaaagaaagaaagttcttttgattctcgatga 5090139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 18074529 - 18074590
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttctt 89  Q
    ||||||||||||||||| | |||||||   | |||||||||||||| ||||| |||||||||    
T  18074529 caacacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttctt 18074590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 60337 - 60398
Alignment:
Q  28 caacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttctt 89  Q
    ||||||||||||||||| | |||||||   | |||||||||||||| ||||| |||||||||    
T  60337 caacacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttctt 60398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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