View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_115 (Length: 253)
Name: NF6871A_low_115
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_115 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 42624492 - 42624254
Alignment:
| Q |
1 |
tcattgataaaaggaatttaaggacggcccagtattcctatcgtggaatcaatatatttttcgtgttttggaccaaaatcaagatcaagtgaactccggg |
100 |
Q |
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| T |
42624492 |
tcattgataaaaggagtttaaggacagcccagtattcctatcgtggaatcaatatatttttcgtgttttggaccaaaatcaagatcaagtgaactccggg |
42624393 |
T |
|
| Q |
101 |
agaccaaagaaactttggatgcattgaaatcatactccaaaaaatgctctcaagatttgacattttgaagctttgcagtagttagcttcgtaaccattct |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42624392 |
acaccaaagaaactttggatgcattgaaatcatactccaaaaaatgctctcaagatttgacattttgaagctttgcagtagttagcttcgtaatcattct |
42624293 |
T |
|
| Q |
201 |
atcatgattaagcatggcgctaacactttctaccaccag |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
42624292 |
atcatgattaagcatggcgctaacactttctaccaccag |
42624254 |
T |
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