View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_117 (Length: 252)
Name: NF6871A_low_117
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_117 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 50764805 - 50764573
Alignment:
| Q |
14 |
agagaataaagctgcacgatgacataacagaagcagcaaccagttgcaactatggaaataagccaagaaacatttgacaataagctaagaatgaccaaag |
113 |
Q |
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| T |
50764805 |
agagaataaagctgcacgatgacataacagaagcagcaaccagttgcaactatggaaataagccaagaaacatttgacaataagctaagaatgaccaaag |
50764706 |
T |
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| Q |
114 |
aaaaccctaaatgaatcaaagtgatagaaaacaacttgataagcctctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatggatctca |
213 |
Q |
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| T |
50764705 |
aaaaccctaaatgaatcaaagtgatagaaaacaacttgataagcctctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatggatctca |
50764606 |
T |
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| Q |
214 |
ttctgaatttgtctaacatttgactatgaacct |
246 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
50764605 |
ttctgaatttgtctaacatttgactatgaacct |
50764573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 35153576 - 35153489
Alignment:
| Q |
157 |
cctctcaaattgcttcaccaa---catctaatttgaagaaaacttttagcatggatctcattctgaatttgtctaacatttgactatga |
242 |
Q |
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| T |
35153576 |
cctctcaaattgcttcaccaataacatcttatttgaagaaaactttaagcatgg-tctcattctgaatttgtccaacatgagactatga |
35153489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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