View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_123 (Length: 251)
Name: NF6871A_low_123
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_123 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 36092912 - 36093113
Alignment:
| Q |
1 |
tcatacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagcttgagtcgagcgacttctctttcactttgtatattcttccttt |
100 |
Q |
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| T |
36092912 |
tcatacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagtttgagtcgagcgacttctctttcactttgtatattcttccttt |
36093011 |
T |
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| Q |
101 |
gtctccaattagtcaaaatcttcttcacttcttgatgatcgataagagaatcaactgattttttataatttgtttgctctaaggaagtttcatgatcagt |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36093012 |
gtctccaattagccaaaatcttcttcacttcttgatgatcgataagagagtcaactgattttttataatttgtttgctctaaggaagtttcatgatcagt |
36093111 |
T |
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| Q |
201 |
aa |
202 |
Q |
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|| |
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| T |
36093112 |
aa |
36093113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 36086919 - 36087120
Alignment:
| Q |
1 |
tcatacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagcttgagtcgagcgacttctctttcactttgtatattcttccttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36086919 |
tcatacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagtttgagtcgagcgatttctctttcactttgtatattcttccttt |
36087018 |
T |
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| Q |
101 |
gtctccaattagtcaaaatcttcttcacttcttgatgatcgataagagaatcaactgattttttataatttgtttgctctaaggaagtttcatgatcagt |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36087019 |
gtctccaattagccaaaatcttcttcacttcttgatgatcgataagagtatcaactggctttttataatttgtttgctctaaggaagtttcatgatcagt |
36087118 |
T |
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| Q |
201 |
aa |
202 |
Q |
| |
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|| |
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| T |
36087119 |
aa |
36087120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 36082178 - 36082350
Alignment:
| Q |
27 |
aaaacgagcagtgtttt-gaatttgctcaagcttgagtcgagcgacttctctttcactttgtatattcttcctttgtctccaattagtcaaaatcttctt |
125 |
Q |
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||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36082178 |
aaaacgagctgtgtttttgaatttgctcaagtttgagtcgagcgacttctctttcactttgtatattcttcctttgtctccaattaaccaaaatcttctt |
36082277 |
T |
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| Q |
126 |
cacttcttgatgatcgataagagaatcaactgattttttataatttgtttgctctaaggaagtttcatgatca |
198 |
Q |
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| T |
36082278 |
cactttatgatgatcgataaaagtttcagcttattttttataatttgtttgctctaatgaagtttcctgatca |
36082350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 36090461 - 36090651
Alignment:
| Q |
1 |
tcatacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagcttgagtcgagcgacttctctttcactttgtatattcttccttt |
100 |
Q |
| |
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|||| ||||||||| ||||| |||||||||| ||||||||||| |||||||||||| |||||||||||| ||||||||||| ||||| |||||||| || |
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| T |
36090461 |
tcatgcatagaatccatgttttcactaaaacaagcagtgtttttaatttgctcaagtttgagtcgagcggcttctctttcaatttgtgtattcttcattc |
36090560 |
T |
|
| Q |
101 |
gtctccaattagtcaaaatcttcttcacttcttgatgatcgataagagaatcaactgattttttataatttgtttgctctaaggaagtttc |
191 |
Q |
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|||||| ||||| |||||||||||| |||| |||||||| |||| || ||| |||||||||||||||| ||||||||| | |||||||| |
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| T |
36090561 |
gtctccgattagccaaaatcttcttagcttcatgatgatcaataaaagtgtcagctgattttttataattcgtttgctctgatgaagtttc |
36090651 |
T |
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