View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_125 (Length: 250)

Name: NF6871A_low_125
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_125
NF6871A_low_125
[»] chr1 (3 HSPs)
chr1 (24-250)||(14475215-14475441)
chr1 (24-250)||(42376868-42377094)
chr1 (24-250)||(2795465-2795691)
[»] scaffold0015 (1 HSPs)
scaffold0015 (24-250)||(27867-28093)
[»] chr8 (1 HSPs)
chr8 (24-250)||(87996-88222)
[»] chr7 (2 HSPs)
chr7 (24-250)||(11712850-11713076)
chr7 (24-250)||(13162058-13162285)
[»] chr3 (2 HSPs)
chr3 (24-250)||(13721452-13721678)
chr3 (24-250)||(5381685-5381911)
[»] chr6 (1 HSPs)
chr6 (24-250)||(16776109-16776339)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 14475441 - 14475215
Alignment:
Q  24 agacgatgttgttcgtttggccatgcgagtggagaaacatttaccgaagaagcattcttataggaatttttcctccactcagaattcttcttatcctcgc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  14475441 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 14475342  T
Q  124 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaaaccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14475341 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaaaccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 14475242  T
Q  224 ttggacatatagcttcaaattgtccaa 250  Q
    |||||||||||||||||||||||||||    
T  14475241 ttggacatatagcttcaaattgtccaa 14475215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 42376868 - 42377094
Alignment:
Q  24 agacgatgttgttcgtttggccatgcgagtggagaaacatttaccgaagaagcattcttataggaatttttcctccactcagaattcttcttatcctcgc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  42376868 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 42376967  T
Q  124 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaaaccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42376968 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 42377067  T
Q  224 ttggacatatagcttcaaattgtccaa 250  Q
    |||||||||||||||||||||||||||    
T  42377068 ttggacatatagcttcaaattgtccaa 42377094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 2795691 - 2795465
Alignment:
Q  24 agacgatgttgttcgtttggccatgcgagtggagaaacatttaccgaagaagcattcttataggaatttttcctccactcagaattcttcttatcctcgc 123  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  2795691 agacgatgttgttcgtttggccatgtgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactaagaattcttcttatccccgc 2795592  T
Q  124 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaaaccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 223  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2795591 aaaacagacaacgatcagcccaacacttctacaaaaccttcttctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatttcaaggtt 2795492  T
Q  224 ttggacatatagcttcaaattgtccaa 250  Q
    |||||||||||||||||||||||||||    
T  2795491 ttggacatatagcttcaaattgtccaa 2795465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 28093 - 27867
Alignment:
Q  24 agacgatgttgttcgtttggccatgcgagtggagaaacatttaccgaagaagcattcttataggaatttttcctccactcagaattcttcttatcctcgc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  28093 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 27994  T
Q  124 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaaaccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27993 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 27894  T
Q  224 ttggacatatagcttcaaattgtccaa 250  Q
    |||||||||||||||||||||||||||    
T  27893 ttggacatatagcttcaaattgtccaa 27867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 87996 - 88222
Alignment:
Q  24 agacgatgttgttcgtttggccatgcgagtggagaaacatttaccgaagaagcattcttataggaatttttcctccactcagaattcttcttatcctcgc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  87996 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 88095  T
Q  124 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaaaccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88096 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 88195  T
Q  224 ttggacatatagcttcaaattgtccaa 250  Q
    |||||||||||||||||||||||||||    
T  88196 ttggacatatagcttcaaattgtccaa 88222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 11712850 - 11713076
Alignment:
Q  24 agacgatgttgttcgtttggccatgcgagtggagaaacatttaccgaagaagcattcttataggaatttttcctccactcagaattcttcttatcctcgc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  11712850 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 11712949  T
Q  124 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaaaccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11712950 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 11713049  T
Q  224 ttggacatatagcttcaaattgtccaa 250  Q
    |||||||||||||||||||||||||||    
T  11713050 ttggacatatagcttcaaattgtccaa 11713076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 13162058 - 13162285
Alignment:
Q  24 agacgatgttgttcgtttggccatgcgagtggagaaacatttaccgaagaagcattcttataggaatttttcctccactcagaattcttcttatcctcgc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  13162058 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactaagaattcttcttatccccgc 13162157  T
Q  124 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaaaccactacagaaaataaacccaaagctaccaagtgtttcaaatgtc-aaggt 222  Q
    ||||||||||| |||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| |||||||||||||||| |||||    
T  13162158 aaaacagacaatgatcagcccaatacttctacaaaaccttcttctaaacccaccacagaaaataaacccaaagctacaaagtgtttcaaatgtcaaaggt 13162257  T
Q  223 tttggacatatagcttcaaattgtccaa 250  Q
    ||||||||||||||||||||||||||||    
T  13162258 tttggacatatagcttcaaattgtccaa 13162285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 13721678 - 13721452
Alignment:
Q  24 agacgatgttgttcgtttggccatgcgagtggagaaacatttaccgaagaagcattcttataggaatttttcctccactcagaattcttcttatcctcgc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  13721678 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 13721579  T
Q  124 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaaaccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13721578 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 13721479  T
Q  224 ttggacatatagcttcaaattgtccaa 250  Q
    |||||||||||||||||||||||||||    
T  13721478 ttggacatatagcttcaaattgtccaa 13721452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 5381911 - 5381685
Alignment:
Q  24 agacgatgttgttcgtttggccatgcgagtggagaaacatttaccgaagaagcattcttataggaatttttcctccactcagaattcttcttatcctcgc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  5381911 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 5381812  T
Q  124 aaaacagacaacgatcagcccagtacttctacaaaaccttctcctaaaaccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 223  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5381811 aaaacagacaacgatcagcctagtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggtt 5381712  T
Q  224 ttggacatatagcttcaaattgtccaa 250  Q
    |||||||||||||||||||||||||||    
T  5381711 ttggacatatagcttcaaattgtccaa 5381685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 16776339 - 16776109
Alignment:
Q  24 agacgatgttgttcgtttggccatgcgagtggagaaacatttaccgaagaagcattcttataggaatttttcctccactcagaattcttcttatcctcgc 123  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||   |    
T  16776339 agacgatgttgttcgtttggccatgtgagtggagaaacatttacccaagaagcattcttataggaattttacctccactgagaattcttcttatccctac 16776240  T
Q  124 aaaacagacaacgatcagccca----gtacttctacaaaaccttctcctaaaaccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaa 219  Q
    |||||||| ||||||||||| |    |||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||| |||||||||    
T  16776239 aaaacagaaaacgatcagcctagtacgtacttctacaaaaccttctcctaaacccactacagattataaacccaaagctaccaagtgtttaaaatgtcaa 16776140  T
Q  220 ggttttggacatatagcttcaaattgtccaa 250  Q
    |||||||||||||||||||||||||||||||    
T  16776139 ggttttggacatatagcttcaaattgtccaa 16776109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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