View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_127 (Length: 250)
Name: NF6871A_low_127
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_127 |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 1052351 - 1052582
Alignment:
| Q |
1 |
gtgtgaacaaattgtaattgtaaagtattggcatccgcctgcggtactgagatgtcatctgcatcgtttttacccctcggagtttcgatggattttgatg |
100 |
Q |
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| T |
1052351 |
gtgtgaataaattgtaattgtaaagtattggcatt-gcctgcggtactgagatgtcatctgcatcgttgttacccctcggagtttcgaaggattttgatg |
1052449 |
T |
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| Q |
101 |
accctatgccatcgaggttgtccttaggttgccactttggaggctgctgtttctgtgaaacaatac-nnnnnnnnnnnngtcaacatgagtttctttcac |
199 |
Q |
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| T |
1052450 |
accctatgccgacgaggttatccttaggttgccacttcggaggctgctgtttctgtgaaacaatactttttttctttttgtcaacatgagtttctttcac |
1052549 |
T |
|
| Q |
200 |
ggggtgcaaccatcgacaacttgaaatatgatg |
232 |
Q |
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| T |
1052550 |
ggggtgcaaccatcgacaacttgaaatatgatg |
1052582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 15408387 - 15408299
Alignment:
| Q |
78 |
cggagtttcgatggattttgatgaccctatgccatcgaggttgtccttaggttgccactttggaggctgctgtttctgtgaaacaatac |
166 |
Q |
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| T |
15408387 |
cggagcttcgaaggctttggatgaacctataccatctagattgtccttaggttgccacttcggaggctgcggtttctgtgaaacaatac |
15408299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 26593200 - 26593437
Alignment:
| Q |
1 |
gtgtgaacaaattgtaattgtaaagtattggcatccgcctgcggtactgagatgtcatctgcatcgtttttacccctcggagtttcgatggattttgatg |
100 |
Q |
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| T |
26593200 |
gtgtgaacagattgtaattgtaatttattggcatccgcttttggtactgaaatgtcatctgcatcgctgttaccccccagagcattgaaggcttttgatg |
26593299 |
T |
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| Q |
101 |
accctatgccatcgaggttgtccttaggttgccactttggaggctgctgtttctgtgaaacaatacnnnnnnnnnnnngtc---aacatgagtttctttc |
197 |
Q |
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| T |
26593300 |
accctatgctgtcggggttttctttaggttgccacttcggaggttgttgtttctctgaaacaatactttttttcttttgtcaataacatta-tttctttc |
26593398 |
T |
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| Q |
198 |
acggggtgcaaccatcgacaacttgaaatatgatgtcca |
236 |
Q |
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| T |
26593399 |
acggggtgcaaccatcgacaacttgaaatatgatgtcca |
26593437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 25822555 - 25822467
Alignment:
| Q |
78 |
cggagtttcgatggattttgatgaccctatgccatcgaggttgtccttaggttgccactttggaggctgctgtttctgtgaaacaatac |
166 |
Q |
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| T |
25822555 |
cggagcttcgaaggctttggatgaacctataccatctagattgtccttaggttgccacttcggaggctgcggtttctgtgaaacaatac |
25822467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 16170251 - 16170163
Alignment:
| Q |
78 |
cggagtttcgatggattttgatgaccctatgccatcgaggttgtccttaggttgccactttggaggctgctgtttctgtgaaacaatac |
166 |
Q |
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| T |
16170251 |
cggagcttcgaaggctttggatgaacctataacatctagattgtccttaggttgccacttcggaggccgcggtttctgtaaaacaatac |
16170163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 12630900 - 12630988
Alignment:
| Q |
78 |
cggagtttcgatggattttgatgaccctatgccatcgaggttgtccttaggttgccactttggaggctgctgtttctgtgaaacaatac |
166 |
Q |
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| T |
12630900 |
cggagcttcgaaggctttggatgaacctatgccatcgagattgtccttaggttgccactccggaggctgttgtttctgtgaaacaatac |
12630988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 12631016 - 12631062
Alignment:
| Q |
190 |
tttctttcacggggtgcaaccatcgacaacttgaaatatgatgtcca |
236 |
Q |
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| T |
12631016 |
tttctttcacgggatgcagccatcgacaacttgaggtatgatgtcca |
12631062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 51411 - 51329
Alignment:
| Q |
84 |
ttcgatggattttgatgaccctatgccatcgaggttgtccttaggttgccactttggaggctgctgtttctgtgaaacaatac |
166 |
Q |
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| T |
51411 |
ttcgaaggctttggatgaacctatgccatcgagattttccttaggttgccactccggaggctgttgtttatgtgaaacaatac |
51329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 51301 - 51255
Alignment:
| Q |
190 |
tttctttcacggggtgcaaccatcgacaacttgaaatatgatgtcca |
236 |
Q |
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| T |
51301 |
tttctttcacgggatgcagccatcgacaacttgagatatgatgtcca |
51255 |
T |
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