View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_135 (Length: 248)
Name: NF6871A_low_135
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_135 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 34042787 - 34043020
Alignment:
| Q |
8 |
gttccgttgtgttagattcttctcccgctttgtgtttcatgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgt |
107 |
Q |
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| T |
34042787 |
gttccgttgtgttagattcttctcccgctttgtgtttcatgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgt |
34042886 |
T |
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| Q |
108 |
tgttgtgctgattttttgttacattcagctctcgaggagtaatgatcctgattcttttattccgtaccttgcgatgaactatttcgatcgcttcttatcg |
207 |
Q |
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| T |
34042887 |
tgttgtgctgattttttgttacattcagctctcgaggagtgatgatcctgattcttttattccgtaccttgcgatgaactatttcgatcgcttcttatcg |
34042986 |
T |
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| Q |
208 |
cggcacaaattgaatctggaggtaatatttttcg |
241 |
Q |
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| T |
34042987 |
cagcacaaattgaatctggaggtaatattgttcg |
34043020 |
T |
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Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 68 - 241
Target Start/End: Complemental strand, 4046366 - 4046193
Alignment:
| Q |
68 |
ttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttttgttacattcagctctcgaggagtaatgatcctgattcttttat |
167 |
Q |
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| T |
4046366 |
ttatcaatttgtagttgatttagtttctgaatcatatggttgctgtgctgattttttgttacattcagttctcgaggagtgatgatcctgattcatttat |
4046267 |
T |
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| Q |
168 |
tccgtaccttgcgatgaactatttcgatcgcttcttatcgcggcacaaattgaatctggaggtaatatttttcg |
241 |
Q |
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| T |
4046266 |
tccgtaccttgtgatgaactatttcaatcttttcaaatcgcagcacaaattgaatctggaggtaatattgttcg |
4046193 |
T |
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