View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_136 (Length: 248)
Name: NF6871A_low_136
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_136 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 53096639 - 53096881
Alignment:
| Q |
6 |
gtttggagttgcaaatagcagcattcagccaatgtggagctttagcggcagcagaagaccttaagnnnnnnnntccatcgaatttggatgagcagaaatg |
105 |
Q |
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| T |
53096639 |
gtttggagttgcaaatagcagcattcagccaatgtggagctttagcggcagcagaagaccttaagaaaaaaaatccatcgaatttggatgagcagaaatg |
53096738 |
T |
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| Q |
106 |
aagggggtggaggaaattaggctacataacaaggtcaaaatgaagttgagtaaaagaaatttactgcaaacaagaagcattagttgcatgcgtcgagcct |
205 |
Q |
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| T |
53096739 |
aagggggtggaggaaattaggctacataacaaggtcaaaatgaagttgagtaaaagaaatttactgcaaacaagaagcattagttgcatacgtcgagcct |
53096838 |
T |
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| Q |
206 |
ggcaataatgttagaccttctgttaaaacaaccaaagatgtct |
248 |
Q |
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| T |
53096839 |
ggcaataatgttagaccttctgttaaaacaaccaaagatgtct |
53096881 |
T |
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