View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_138 (Length: 248)
Name: NF6871A_low_138
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_138 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 41224571 - 41224447
Alignment:
| Q |
16 |
attatgatgatatcaaataaattaactaggtaagcnnnnnnnttaccatcactccatttgtgcccaacaacaagaagtgaatcatcgctatttctcctcc |
115 |
Q |
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| T |
41224571 |
attatgatgatatcaaataaattaactaggtaagcaaaaaaattaccatcactccatttgtgcccaacaacaagaagtgaatcgtcgctatttctcctcc |
41224472 |
T |
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| Q |
116 |
tattttctcaagtttcaaatctcaa |
140 |
Q |
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| T |
41224471 |
tattttctcaagtttcaaatctcaa |
41224447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 41224421 - 41224315
Alignment:
| Q |
132 |
aaatctcaatccttaactagtgtttcccctttattatttcaaatttcaaaaccttcccctctatatttcaatcatctagatattccacattattttctca |
231 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41224421 |
aaatctcaatccttaactagtgtttctcctttattatttcaaatttcaaaaccttcccctctatatttcaatcatctagatattccacatttttttctca |
41224322 |
T |
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| Q |
232 |
cattttt |
238 |
Q |
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||||||| |
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| T |
41224321 |
cattttt |
41224315 |
T |
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