View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_139 (Length: 248)
Name: NF6871A_low_139
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_139 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 11527322 - 11527527
Alignment:
| Q |
19 |
aatattataaccagggcactgtatattgaaacttaaaagaactgtttctctttcaaatttgcagacacgcgtccacatatttcgttcctacattatacat |
118 |
Q |
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| T |
11527322 |
aatattataaccagggcactgtatattgaaacttgaaagaactgtttctctttcaaatttgcagacacgcatccacatatttcgttcctacattatacat |
11527421 |
T |
|
| Q |
119 |
gtataaaataaagcatcaatcaagtattacaaaaaatgcttgcaatgtcttgcgatgcaaaatctatgaggtgcaaattcaaattgagaaagaacagaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11527422 |
gtataaaataaagcatcaatcaagtattacaaaaaatgcttgcaatgtcttgcgatgcaaaatctatgaggtgcaaattcaaattgagaaagaacagaag |
11527521 |
T |
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| Q |
219 |
aaaaca |
224 |
Q |
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|||||| |
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| T |
11527522 |
aaaaca |
11527527 |
T |
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