View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_14 (Length: 418)
Name: NF6871A_low_14
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 59 - 395
Target Start/End: Complemental strand, 38869552 - 38869217
Alignment:
| Q |
59 |
tttctaaaattattttccattgaatgttgtctatcttctcattgaatctgttttctgtttttgatgcacttcaaatatatgatcaatgacgtttctgcat |
158 |
Q |
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| T |
38869552 |
tttctaaaattattttccattgaatgttgtctatcttctcgttgaatctgttttctgtttttgatgcacttcaaatatatgatcaatg-cgtttctgcat |
38869454 |
T |
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| Q |
159 |
tgtgattttaaatgataagaacgaatttgaatgctaagtacaaaatatttgttcattcattattttaaatttggggtgttggagttaaataatttatggt |
258 |
Q |
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| T |
38869453 |
tatgattttaaatgataagaacgaatttgaatgctaagtacaaaatatttgttcattcattattttaaatttggggtgttggagttaaataatttatggt |
38869354 |
T |
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| Q |
259 |
aagcatattcacctgatttgttaccttcttttttataatggctactcattgcaatatatcttaggcaactcgcatatgacatggaaagagcgcaaaaagg |
358 |
Q |
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| T |
38869353 |
aagcatattcacctgatttgttaccttcttttttataatggctactcattgcaatatatcttaggcaactcgcatatgacatggaaagagcgcaaaaagg |
38869254 |
T |
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| Q |
359 |
ttgaagataggaaggttgtttcccttggtgggaaggt |
395 |
Q |
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| T |
38869253 |
ttgaagataggaaggttgtttcccttggtgggaaggt |
38869217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38869617 - 38869573
Alignment:
| Q |
1 |
tcaggaagattatggaagacgtccaaaacttcagtattttctctc |
45 |
Q |
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| T |
38869617 |
tcaggaagattatggaagacgtccaaaacttcagtattttctctc |
38869573 |
T |
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