View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_143 (Length: 247)
Name: NF6871A_low_143
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_143 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 41311227 - 41311027
Alignment:
| Q |
23 |
ttatgatgataagactgaaatggattttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattac |
122 |
Q |
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| T |
41311227 |
ttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattac |
41311128 |
T |
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| Q |
123 |
tctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacacaa |
222 |
Q |
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| T |
41311127 |
tctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacgcaa |
41311028 |
T |
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| Q |
223 |
t |
223 |
Q |
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| T |
41311027 |
t |
41311027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 218
Target Start/End: Complemental strand, 43164894 - 43164710
Alignment:
| Q |
34 |
agactgaaatggattttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaat |
133 |
Q |
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| T |
43164894 |
agactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcagagattgctcttccagatgatttttatagtgatttttctcccaacct |
43164795 |
T |
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| Q |
134 |
ttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatac |
218 |
Q |
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| T |
43164794 |
ttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtctacacttaagatatgggtaatgcaagaatac |
43164710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 218
Target Start/End: Original strand, 30165711 - 30165883
Alignment:
| Q |
34 |
agactgaaatggattttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaat |
133 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||| || |||||| ||||| ||| ||| || || | ||| |||| |
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| T |
30165711 |
agactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagatagctcttccaaatgattgttctcgtg------------gaat |
30165798 |
T |
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| Q |
134 |
ttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatac |
218 |
Q |
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| T |
30165799 |
ttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagatatgggtgatgcaagaatac |
30165883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 28181036 - 28180965
Alignment:
| Q |
49 |
ttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgatt |
120 |
Q |
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| T |
28181036 |
ttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagatgatttttatagggatt |
28180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 30125160 - 30124981
Alignment:
| Q |
44 |
ggattttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttg |
143 |
Q |
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|||| ||||| |||||||||||||||||||| |||| ||||||| | ||||| ||| ||| |||||||| ||||||||| || | |||||||||| |
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| T |
30125160 |
ggatgttattgttgcctttgatttaaaggaagcgacaatgtcagaaatagctcttccaaatgatttttataccgattactctcctgtagattatgatttg |
30125061 |
T |
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| Q |
144 |
atggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacacaat |
223 |
Q |
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| T |
30125060 |
ttagtatttggtggacttatcagtttatggattcttgagatggatgcagttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 30131114 - 30131068
Alignment:
| Q |
44 |
ggattttattattgcctttgatttaaaggaaatgacactgtcagaga |
90 |
Q |
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|||| ||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
30131114 |
ggatgttattatagcctttaatttaaaggaaatgacaatgtcagaga |
30131068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 30120109 - 30120068
Alignment:
| Q |
49 |
ttattattgcctttgatttaaaggaaatgacactgtcagaga |
90 |
Q |
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| T |
30120109 |
ttattattgcctttgatttaaaggaaacgacaatatcagaga |
30120068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
188 |
tacacttaagatatgggtgatgcaagaatacaca |
221 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
44 |
ggattttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
105 |
Q |
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|||| ||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
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| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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