View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_146 (Length: 247)
Name: NF6871A_low_146
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_146 |
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| [»] chr8 (5 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 1801649 - 1801424
Alignment:
| Q |
22 |
atgtcacaactattgacttggctgcttgtggtatcagtccaatccaggttcaagagattcattcaatttcacaatattatgaacctttcatgacatttat |
121 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1801649 |
atgttacaactattgacttggctgcttgtggtatcagtccaatccaggttcaagagattcattcaatttcacaatattatgaacctttcatgacatttat |
1801550 |
T |
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| Q |
122 |
ggcatctcttcctccaaaggagaaggtgattcttgtgggtcatagttttggagggatacccttatctgttgctatggaaaaattccctaagaaaatttct |
221 |
Q |
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| T |
1801549 |
ggaatctcttcctccaaaggagaaggtgattcttgtgggtcatagttttggagggatacccttatctgttgctatggaaaaattccctaagaaaatttct |
1801450 |
T |
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| Q |
222 |
gttgcagtttttatcactgcattggt |
247 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1801449 |
gttgcagtttttatcactgcattggt |
1801424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 1784839 - 1784614
Alignment:
| Q |
22 |
atgtcacaactattgacttggctgcttgtggtatcagtccaatccaggttcaagagattcattcaatttcacaatattatgaacctttcatgacatttat |
121 |
Q |
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|||| |||||||||||| ||||||||| ||||||| |||||| || |||||||||||||||||||||||| ||||||||||||| || ||||||||||| |
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| T |
1784839 |
atgttacaactattgacatggctgcttcaggtatcaatccaatacaagttcaagagattcattcaatttcaaaatattatgaaccattgatgacatttat |
1784740 |
T |
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| Q |
122 |
ggcatctcttcctccaaaggagaaggtgattcttgtgggtcatagttttggagggatacccttatctgttgctatggaaaaattccctaagaaaatttct |
221 |
Q |
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| T |
1784739 |
ggaatctcttcctccaaaggagaaggtgattcttgtgggtcatagttatggagggatacccttatctgttgctatggaaaagttctctaagaaagtttcg |
1784640 |
T |
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| Q |
222 |
gttgcagtttttatcactgcattggt |
247 |
Q |
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|||||||||||| |||||||| |||| |
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| T |
1784639 |
gttgcagtttttgtcactgcactggt |
1784614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 1777594 - 1777380
Alignment:
| Q |
33 |
attgacttggctgcttgtggtatcagtccaatccaggttcaagagattcattca---atttcacaatattatgaacctttcatgacatttatggcatctc |
129 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |||||||||| || ||||||| | ||||| |
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| T |
1777594 |
attgaattggctgcttgtggtatcagtccaatacaggttcaagagattcattcatcaatttcaaaatatcatgaacctttgatttcatttatagaatctc |
1777495 |
T |
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| Q |
130 |
ttcctccaaaggagaaggtgattcttgtgggtcatagttttggagggatacccttatctgttgctatggaaaaattccctaagaaaatttctgttgcagt |
229 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
1777494 |
ttcctccaaaggaaaaggtgattcttgtgggtcatagttttggagggatacccttatctgttgctatggaaaagttccctaagaaaatttctcttgcagt |
1777395 |
T |
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| Q |
230 |
ttttatcactgcatt |
244 |
Q |
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|||| |||||||||| |
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| T |
1777394 |
ttttgtcactgcatt |
1777380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 1772639 - 1772428
Alignment:
| Q |
22 |
atgtcacaactattgacttggctgcttgtggtatcagtccaatccaggttcaagagattcattcaatttcacaatattatgaacctttcatgacatttat |
121 |
Q |
| |
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|||| ||||||||||| |||||||||| ||||||| |||||| || || ||||||||||||||||||||| ||||||||||||| || ||||||||||| |
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| T |
1772639 |
atgttacaactattgaattggctgcttcaggtatcaatccaatacaagtccaagagattcattcaatttcaaaatattatgaacccttgatgacatttat |
1772540 |
T |
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| Q |
122 |
ggcatctcttcctccaaaggagaaggtgattcttgtgggtcatagttttggagggatacccttatctgttgctatggaaaaattccctaagaaaatttct |
221 |
Q |
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|| ||||||||||||||| |||||||| |||||||| ||||||||| | || ||| | | |||||||||||||||||| ||||| | ||||| || |
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| T |
1772539 |
ggaatctcttcctccaaatgagaaggtaattcttgttggtcatagtctgggtggggtgtctacatctgttgctatggaaaagttcccacaaaaaatctca |
1772440 |
T |
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| Q |
222 |
gttgcagttttt |
233 |
Q |
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|||||||||||| |
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| T |
1772439 |
gttgcagttttt |
1772428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 1768950 - 1768752
Alignment:
| Q |
40 |
tggctgcttgtggtatcagtccaatccaggttcaagagattcattcaatttcacaatattatgaacctttcatgacatttatggcatctcttcctccaaa |
139 |
Q |
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||||||||||||||| || ||||| ||| | |||||| ||||||||||||| |||| || ||||||| ||||||||||||| || ||||||| | |
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| T |
1768950 |
tggctgcttgtggtaccaatccaaagcagatgcaagaggttcattcaatttctgaataccatcaacctttgatgacatttatggagtcacttcctcttga |
1768851 |
T |
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| Q |
140 |
ggagaaggtgattcttgtgggtcatagttttggagggatacccttatctgttgctatggaaaaattccctaagaaaatttctgttgcagtttttatcac |
238 |
Q |
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|||||| ||| ||||||| ||||||||| |||||||| | | | ||| ||||||||||||| | |||| | ||||| | |||||||||||| ||||| |
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| T |
1768850 |
ggagaaagtggttcttgttggtcatagtcttggagggttgtctgtgtctattgctatggaaaactaccctcacaaaatctttgttgcagttttcatcac |
1768752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 25727609 - 25727834
Alignment:
| Q |
22 |
atgtcacaactattgacttggctgcttgtggtatcagtccaatccaggttcaagagattcattcaatttcacaatattatgaacctttcatgacatttat |
121 |
Q |
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|||| ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25727609 |
atgttacaactattgaattggctggttgtggtatcagtccaatacaggttcaagagattcattcaatttcacaatattatgaaccttttatgacatttat |
25727708 |
T |
|
| Q |
122 |
ggcatctcttcctccaaaggagaaggtgattcttgtgggtcatagttttggagggatacccttatctgttgctatggaaaaattccctaagaaaatttct |
221 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25727709 |
ggaatctcttcctccaaaggagaaggtgattcttgtgggtcatagttttggagggatacccttatctgttgctatggaaaaattccctaacaaaatttct |
25727808 |
T |
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| Q |
222 |
gttgcagtttttatcactgcattggt |
247 |
Q |
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|||||||||||||||||||||||||| |
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| T |
25727809 |
gttgcagtttttatcactgcattggt |
25727834 |
T |
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