View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_149 (Length: 246)
Name: NF6871A_low_149
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_149 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 40659955 - 40660096
Alignment:
| Q |
15 |
acatcaacaaacaacaa-gaagcacatcatggaacatttggcttgcacactactatcaagctgatacccaattcctacatgccctgtaaaccataggctc |
113 |
Q |
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| T |
40659955 |
acatcaacaaacaacaaagaagcacatcatggaacatttggcttgcacactactatcaagctgatacccaattcctacatgccctgtaaaccataggctc |
40660054 |
T |
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| Q |
114 |
caaacaggacaacaaccaagttcaaccttcacaaagcatgac |
155 |
Q |
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| T |
40660055 |
caaacaggacaacaaccaagttcaaccttcacaaagcatgac |
40660096 |
T |
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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 40660127 - 40660179
Alignment:
| Q |
185 |
tctgcaccactagccacacaccaccttttaaatcctgcagcagtgatgtactt |
237 |
Q |
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| T |
40660127 |
tctgcaccactagccacacaccaccttttaaatcctgcagcagtgatgtactt |
40660179 |
T |
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