View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_15 (Length: 417)
Name: NF6871A_low_15
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 54 - 410
Target Start/End: Original strand, 32060103 - 32060459
Alignment:
| Q |
54 |
aacacataaatgagaagattgatatatctaatgtattaaaattttaaataaagatttagtgtttgactcacttgagtgtttgctcttagtccaacatgat |
153 |
Q |
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| T |
32060103 |
aacatataaatgagaagattgatatatctaatgtattaaaattttaaataaagatctagtgtttgactcacttgagtgtttgctcttggtccaacatgat |
32060202 |
T |
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| Q |
154 |
gattcattgggctcccctcatgactcaacaatggtatcaaaactaatgatttgcgtatcaaaattcctcctaacaatagtagttagacgatatgtcacat |
253 |
Q |
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| T |
32060203 |
gatttactgggctcccctcgtgactcaacaatggtatcaaaactaatgatttgcgtatcaaaattcctcctaacaatagtagttagacgatgtgtcacat |
32060302 |
T |
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| Q |
254 |
tgatgtatctctacttggaataatgtttggaaatgggaggggctcaaagaataaaatgctttgtttggttgctttataatgatggattgaagactaagga |
353 |
Q |
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| T |
32060303 |
tgatgtatgtctacttggaataatgtttggaaatgggaggggctcaaagaataaaatgctttgtttggttgctttataatgatggattgaagactaagga |
32060402 |
T |
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| Q |
354 |
tgtaagatctatatatgatatgggtacaaatttgttctgacctttgtgttcatctca |
410 |
Q |
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| T |
32060403 |
tgtaagatctatatatgatatgggtacaaattcgttctgacctttgtgttcttctca |
32060459 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 346
Target Start/End: Original strand, 37258011 - 37258096
Alignment:
| Q |
262 |
ctctacttggaataatgtttggaaatgggaggggc-tcaaagaataaaatgctttgtttggttgctttataatgatggattgaaga |
346 |
Q |
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| T |
37258011 |
ctctacctggaataatgtttgaaaatgagaggagcctcaaaaaataaaatgctttctttggctgctttacaattatggattgaaga |
37258096 |
T |
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