View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_152 (Length: 246)
Name: NF6871A_low_152
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_152 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 34497029 - 34496800
Alignment:
| Q |
16 |
atcattgaagtctccacaacacaaccacatatcctcatcaaccggctttaagcttcgcagcagttcccaagtgtccttcttcttaccttcctcagggtac |
115 |
Q |
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| T |
34497029 |
atcattgaagtctccacaacacaaccacatatcctcatcaaccggctttaagcttcgcagtagttcccaagtgtccttcttcttaccttcctcagggtgc |
34496930 |
T |
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| Q |
116 |
ccataaataccagagatacaccaannnnnnnccagtttctgcatcttcaattcttcccattatatggtttagtgagtaagatacaattgatagactaaca |
215 |
Q |
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| T |
34496929 |
ccataaataccagagatacaccaa-ttttttccactttctgcatcttcaatcctccccattatatggtttagagagtaagatacaattgatagactaaca |
34496831 |
T |
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| Q |
216 |
ctatccatctacaataaagcaatgactcctg |
246 |
Q |
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| T |
34496830 |
ctatccatccacaataaagcaatgcctcctg |
34496800 |
T |
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Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 204269 - 204342
Alignment:
| Q |
151 |
tttctgcatcttcaattcttcccattatatggtttagtgagtaagatacaattgatagactaacactatccatc |
224 |
Q |
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| T |
204269 |
tttctacatcttcaatcctccccataatatggtttagagagtaagatataattgacaggttaacactatccatc |
204342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 210346 - 210419
Alignment:
| Q |
151 |
tttctgcatcttcaattcttcccattatatggtttagtgagtaagatacaattgatagactaacactatccatc |
224 |
Q |
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| T |
210346 |
tttctacatcttcaatcctccccataatatggtttagagagtaagatataattgacaggttaacactatccatc |
210419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 8370790 - 8370862
Alignment:
| Q |
157 |
catcttcaattcttcccattatatggtttagtgagtaagatacaattgatagactaacactatccatctacaa |
229 |
Q |
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| T |
8370790 |
catcttcaatcctccccataatatggtttagagagtaagatctaattgacaggtttacactatccatccacaa |
8370862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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