View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6871A_low_155 (Length: 245)
Name: NF6871A_low_155
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_155 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 40452767 - 40452996
Alignment:
| Q |
16 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatgatgtagatcttcta |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40452767 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgatggacggctcattcaggaggaggatttaaatcatgaccatgatgtagatcttctg |
40452866 |
T |
|
| Q |
116 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40452867 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttggtgcctctgtcactttcacggccctgaaagaccgttatgagtacc |
40452966 |
T |
|
| Q |
216 |
tgttgaacagggggaaccagtggctggggg |
245 |
Q |
| |
|
||||||||||| | ||||||| |||||||| |
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|
| T |
40452967 |
tgttgaacaggtgtaaccagttgctggggg |
40452996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 632928 - 632699
Alignment:
| Q |
16 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatgatgtagatcttcta |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||| ||||| ||| |||||||| |||||||||||| ||| |||||||| ||||||||| || |
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|
| T |
632928 |
catcacactggatgatgtggcttgtctcctagacatccccctcgctagacatctcattcatgaggaggatttagatcttgaccatgttgtagatctactg |
632829 |
T |
|
| Q |
116 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
215 |
Q |
| |
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|| ||||||| |||||| ||||||||||| | || ||||||||||||||||| | ||| |||||||||||||||||| |||||| ||||||||||| |
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| T |
632828 |
gtcactcaccaattgttttcggtggaggatacagtcatgcaggtgactgattttggttcctttgtcactttcacggccctaaaagaccgttatgagtaca |
632729 |
T |
|
| Q |
216 |
tgttgaacagggggaaccagtggctggggg |
245 |
Q |
| |
|
||||||||||| | ||||||| |||||||| |
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|
| T |
632728 |
tgttgaacaggtgtaaccagttgctggggg |
632699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 9386030 - 9386240
Alignment:
| Q |
16 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatgatgtagatcttcta |
115 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||||| || |
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| T |
9386030 |
catcacactggatgatgttacttgtctcctagacatccccgtcgctggacggctcattcaagaggaggatttagatcatgaccatgttgtagatctgctg |
9386129 |
T |
|
| Q |
116 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
9386130 |
gtgactcaccttttctttccggtggaggatgcggttgagcaagtgactgattttggtgcctctgtcactttcacggccctaaaagaccgttatgagtaca |
9386229 |
T |
|
| Q |
216 |
tgttgaacagg |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
9386230 |
tgttgaacagg |
9386240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 941359 - 941565
Alignment:
| Q |
16 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatgatgtagatcttcta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||| || |
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|
| T |
941359 |
catcacactggatgatgttgcttgtctcctagacatccccgtcgctggacggatcattcaggaggaggatttagatcataaccatgttgtagatctgctg |
941458 |
T |
|
| Q |
116 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
215 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| |||||||||||| |
|
|
| T |
941459 |
gtgactcaccttttgttttcgatggaggatgcggttgagcagtagactgattttggtgcctctctcactttcacggccttgaaagaccgttatgagtacc |
941558 |
T |
|
| Q |
216 |
tgttgaa |
222 |
Q |
| |
|
||||||| |
|
|
| T |
941559 |
tgttgaa |
941565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 39687141 - 39686935
Alignment:
| Q |
16 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatgatgtagatcttcta |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| || |||||| | |||||||| |||||||||||| |||||||||||| ||||||||| || |
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|
| T |
39687141 |
catcacactggatgatgtggcttgtctcctagacatccctgttgctggaaggctcattcacgaggaggatttagatcatgaccatgttgtagatctgctg |
39687042 |
T |
|
| Q |
116 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
215 |
Q |
| |
|
|| |||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39687041 |
gtcactcacctattgtttccggtggaggatacggttgggcaggtgactgattttggtgcctctgtcactttcacggccctgaaagaccgttatgagtacc |
39686942 |
T |
|
| Q |
216 |
tgttgaa |
222 |
Q |
| |
|
||||||| |
|
|
| T |
39686941 |
tgttgaa |
39686935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 21565160 - 21565366
Alignment:
| Q |
16 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatgatgtagatcttcta |
115 |
Q |
| |
|
||||||||| |||||||| |||||||| ||| |||||| |||||||| | || ||||||||||| |||||| ||| | ||| || |||| | || || |
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|
| T |
21565160 |
catcacacttgatgatgtagcttgtcttctaggtatccccatcgctggaaggctgattcaggaggatgatttagatcctaaccttggtgtacagctgctg |
21565259 |
T |
|
| Q |
116 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtg---actgattttgatgcctctgtcactttcacggccctgaaagactgttatgagt |
212 |
Q |
| |
|
|||| |||| ||||||||||||||||| ||||| ||| ||||| | | ||| | |||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
21565260 |
gtgaatcactaattgtttccggtggaggaagcggtggagaaggtgagtaataattcaggtgcctctgtcacttacacggccctgaaagagcgttatgagc |
21565359 |
T |
|
| Q |
213 |
acctgtt |
219 |
Q |
| |
|
||||||| |
|
|
| T |
21565360 |
acctgtt |
21565366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 8523479 - 8523269
Alignment:
| Q |
16 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatgatgtagatcttcta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| | | |||||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||| || |
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|
| T |
8523479 |
catcacactggatgatgttgcttgtctccttggcatccccgtcgctggacggctcattcagaaggaggatttagatcatgaccatgttgtagatctcctg |
8523380 |
T |
|
| Q |
116 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
215 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||| ||| ||| ||||||||||| ||||| | ||| |
|
|
| T |
8523379 |
gtgactcaccttttgtttccagtggaggatgcggttgggcaagtgactgattttagtgcctctgtctcttacacacccctgaaagaccgttataaccacc |
8523280 |
T |
|
| Q |
216 |
tgttgaacagg |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
8523279 |
tgttgaacagg |
8523269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 6704206 - 6704414
Alignment:
| Q |
16 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatgatgtagatcttcta |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||| |||||||||||| |||| ||| |||||||||||| ||||||||||| |||||| || ||| |
|
|
| T |
6704206 |
catcacactggatgatgtggcttgtctcctagacatcctcgtcgctggacggctcactcacgaggaggatttagatcatgaccattctgtagaactgcta |
6704305 |
T |
|
| Q |
116 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
215 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||| ||| |||||||| |||||||| ||||||||||||||||||||||||||| ||| ||||||| ||| |
|
|
| T |
6704306 |
gtgactcacctattgtttccaatggaggacgcgattgggcaggtgagtgattttggtgcctctgtcactttcacggccctgaaggaccgttatgaccacc |
6704405 |
T |
|
| Q |
216 |
tgttgaaca |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
6704406 |
tgttgaaca |
6704414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 28444736 - 28444945
Alignment:
| Q |
16 |
catcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcatgaccatgatgtagatcttcta |
115 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||||||||| |||||| |||||||||| |||||||||||| ||||||| |||| ||||||||| | |
|
|
| T |
28444736 |
catcacactg-atgatgtggcttgtctcctagacatccccgtagctggaagactcattcacgaggaggatttagatcatgatcatgttgtagatctgttg |
28444834 |
T |
|
| Q |
116 |
gtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgattttgatgcctctgtcactttcacggccctgaaagactgttatgagtacc |
215 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||||||| |||||||| |||||||| |||||||||||||||||| |||||||| ||| ||||||| ||| |
|
|
| T |
28444835 |
gtgactcacctattgtttccggcggaggacgcggttgggcaggtgagtgattttggtgcctctgtcactttcacagccctgaaggaccgttatgaccacc |
28444934 |
T |
|
| Q |
216 |
tgttgaacagg |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
28444935 |
tgttgaacagg |
28444945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 25400994 - 25401096
Alignment:
| Q |
68 |
ctcattcaggaggaggatttaaatcatgaccatgatgtagatcttctagtgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgatt |
167 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25400994 |
ctcattcaggaggaggatttagatcatgaccatgttttagatctgctgctgactcaccttttgtttccggtggaggatgcggttgagcaggtgactgatt |
25401093 |
T |
|
| Q |
168 |
ttg |
170 |
Q |
| |
|
||| |
|
|
| T |
25401094 |
ttg |
25401096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 2028934 - 2029010
Alignment:
| Q |
18 |
tcacactggatgatgttgcttgtctcttagacatccccgtcgctggacgactcattcaggaggaggatttaaatcat |
94 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||||| ||| |||||| || ||| ||||||| || ||| ||||| |
|
|
| T |
2028934 |
tcacactagatgatgtggcttgtcttctagacatccccatcgttggacggcttattgaggaggatgacttagatcat |
2029010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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