View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6871A_low_157 (Length: 243)

Name: NF6871A_low_157
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6871A_low_157
NF6871A_low_157
[»] chr7 (10 HSPs)
chr7 (7-232)||(20053227-20053452)
chr7 (78-232)||(2278236-2278391)
chr7 (66-196)||(19842384-19842514)
chr7 (77-163)||(2641637-2641723)
chr7 (77-231)||(17915651-17915805)
chr7 (82-205)||(17918788-17918910)
chr7 (178-235)||(8807580-8807637)
chr7 (7-52)||(17915569-17915614)
chr7 (78-145)||(19142741-19142808)
chr7 (78-145)||(20742140-20742207)
[»] chr5 (3 HSPs)
chr5 (67-232)||(24885115-24885280)
chr5 (78-205)||(21216340-21216467)
chr5 (78-163)||(9824313-9824398)
[»] chr4 (2 HSPs)
chr4 (82-190)||(22316639-22316747)
chr4 (64-221)||(5842711-5842869)
[»] scaffold0062 (1 HSPs)
scaffold0062 (77-205)||(2667-2795)
[»] chr8 (4 HSPs)
chr8 (56-232)||(5826350-5826526)
chr8 (115-232)||(23432813-23432931)
chr8 (56-232)||(5828949-5829131)
chr8 (107-205)||(18565905-18566003)
[»] chr2 (4 HSPs)
chr2 (77-229)||(16197355-16197507)
chr2 (116-232)||(25348187-25348303)
chr2 (78-231)||(8685730-8685884)
chr2 (113-185)||(16152144-16152216)
[»] chr3 (3 HSPs)
chr3 (64-183)||(21318506-21318624)
chr3 (111-213)||(11829429-11829531)
chr3 (78-135)||(13340747-13340804)
[»] chr6 (1 HSPs)
chr6 (77-157)||(19731562-19731642)
[»] scaffold0041 (1 HSPs)
scaffold0041 (81-193)||(26530-26641)
[»] chr1 (2 HSPs)
chr1 (77-209)||(9756448-9756580)
chr1 (67-163)||(19223698-19223794)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 20053227 - 20053452
Alignment:
Q  7 ctgatatgaataatcccaatgaaaagtcctttgaatttcctttgctattcgttgttatcttcgttcctagtgtcctttgtctggttgaacacgtatatgg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20053227 ctgatatgaataatcccaatgaaaagtcctttgaatttcctttgctattcgttgttatcttcgttcctagtgtcctttgtctggttgaacacgtttatgg 20053326  T
Q  107 aagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatgtggattatgggtcccttagatccaagtag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20053327 aagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatgtggattatgggtcccttagatccaagtag 20053426  T
Q  207 ccagtcaaattttgtgtttgatgtcc 232  Q
    ||||||||||||||||||||||||||    
T  20053427 ccagtcaaattttgtgtttgatgtcc 20053452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 2278236 - 2278391
Alignment:
Q  78 gtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatg 177  Q
    ||||||||| |||||| | ||||| |  ||||||||||||| || || | ||||| || ||||||||||| || |||||||||||| | || ||||||||    
T  2278236 gtcctttgtttggttgcaaacgtagacagaagaagacaaaataattgatttatcatatactatgatagagttagctcacaaaataagacaaaagcttatg 2278335  T
Q  178 tggattatgggtcccttagatccaagta-gccagtcaaattttgtgtttgatgtcc 232  Q
    |||||| |||||||||| |||||||||| ||||||||| || ||||||||||||||    
T  2278336 tggattctgggtcccttggatccaagtatgccagtcaacttctgtgtttgatgtcc 2278391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 19842514 - 19842384
Alignment:
Q  66 ttcgttcctagtgtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataata 165  Q
    |||||||||  ||||| || |||||||| ||||||| |  ||||||||||||||||||||| |||||||| |||||||||| | || ||||| ||||| |    
T  19842514 ttcgttccttatgtcccttttctggttgtacacgtagacagaagaagacaaaagaactgctctatcagatactatgatagacacaattcacagaataaaa 19842415  T
Q  166 aaatagcttatgtggattatgggtcccttag 196  Q
     || |||||||||||||| ||| ||||||||    
T  19842414 caaaagcttatgtggattctggctcccttag 19842384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 2641723 - 2641637
Alignment:
Q  77 tgtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataa 163  Q
    ||||||||||||||||| |||| || |  ||||||||||||||||||||| |||||||| |||||||||||||| |||||| |||||    
T  2641723 tgtcctttgtctggttgcacacataaacagaagaagacaaaagaactgctctatcagatactatgatagagatagctcacagaataa 2641637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 17915651 - 17915805
Alignment:
Q  77 tgtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttat 176  Q
    |||||||||||  |||| ||| ||| |  |||||||||||||| ||| || |||||||| |||||  ||||| | |||||| ||||| | || ||||||     
T  17915651 tgtcctttgtcgtgttgtacatgtagacagaagaagacaaaagcactactctatcagatactatggcagagacagctcacagaataagacaaaagcttac 17915750  T
Q  177 gtggattatgggtcccttagatccaagtagccagtcaaattttgtgtttgatgtc 231  Q
    ||||||| ||||||||| ||||||||||||| ||||| ||| ||||| |||||||    
T  17915751 gtggattctgggtccctaagatccaagtagctagtcagattatgtgtctgatgtc 17915805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 17918788 - 17918910
Alignment:
Q  82 tttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatgtgga 181  Q
    |||||||| ||| ||||||| |  |||||||| ||||||| |||| |||| ||| ||||||||| || || |||||  |||| | || ||||||||||||    
T  17918788 tttgtctgtttgcacacgtagacagaagaagataaaagaaatgctctatcggatactatgatagggacaattcacatgataagacaa-agcttatgtgga 17918886  T
Q  182 ttatgggtcccttagatccaagta 205  Q
    || ||||||||||| |||||||||    
T  17918887 ttctgggtcccttatatccaagta 17918910  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 8807580 - 8807637
Alignment:
Q  178 tggattatgggtcccttagatccaagtagccagtcaaattttgtgtttgatgtccatc 235  Q
    |||||| |||||||||  |||||||||||||||||| ||||||||| |||| ||||||    
T  8807580 tggattctgggtccctctgatccaagtagccagtcagattttgtgtctgatttccatc 8807637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 17915569 - 17915614
Alignment:
Q  7 ctgatatgaataatcccaatgaaaagtcctttgaatttcctttgct 52  Q
    |||||||| ||||||||| || ||||||||||||||||||||||||    
T  17915569 ctgatatggataatcccattggaaagtcctttgaatttcctttgct 17915614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 19142808 - 19142741
Alignment:
Q  78 gtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatag 145  Q
    |||||||||||| ||| ||||||| |  |||||||||||||||||| || |||||||| |||| ||||    
T  19142808 gtcctttgtctgtttgcacacgtagacagaagaagacaaaagaactactttatcagatactattatag 19142741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 20742207 - 20742140
Alignment:
Q  78 gtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatag 145  Q
    |||||||||||| ||| ||||||| |  |||||||||||||||||| || |||||||| |||| ||||    
T  20742207 gtcctttgtctgtttgcacacgtagacagaagaagacaaaagaactactttatcagatactattatag 20742140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 232
Target Start/End: Complemental strand, 24885280 - 24885115
Alignment:
Q  67 tcgttcctagtgtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataa 166  Q
    ||||||||| ||||||||||| ||||| |||| || |   |||||||||||||||||||| ||  ||||||||||||||| | |||||||| ||||| |     
T  24885280 tcgttcctaatgtcctttgtccggttgtacacataaacaaaagaagacaaaagaactgctctactagatgctatgatagaaaaaactcacataataagac 24885181  T
Q  167 aatagcttatgtggattatgggtcccttagatccaagtagccagtcaaattttgtgtttgatgtcc 232  Q
    || |||||||||||||| | |||||||||||| ||||||||| |||| ||| ||||| | ||||||    
T  24885180 aaaagcttatgtggattctaggtcccttagattcaagtagcctgtcagattctgtgtctaatgtcc 24885115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 21216467 - 21216340
Alignment:
Q  78 gtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatg 177  Q
    |||||||||||| ||| |||| || |  ||||||||||||| ||||| | |||||||| |||||| ||| | |||| | ||||||| | ||  ||||| |    
T  21216467 gtcctttgtctgtttgcacacatagacagaagaagacaaaataactgatctatcagatactatgacagatacaacttataaaataagacaaaggcttacg 21216368  T
Q  178 tggattatgggtcccttagatccaagta 205  Q
    | |||| |||||||||  ||||||||||    
T  21216367 ttgattttgggtccctcggatccaagta 21216340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 9824313 - 9824398
Alignment:
Q  78 gtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataa 163  Q
    |||||||||||| ||| | ||||| |  || |||||||||||||||||| |||||||| ||| ||||| || || ||||| |||||    
T  9824313 gtcctttgtctgtttgcatacgtagagagaggaagacaaaagaactgctctatcagatactaagatagggacaattcacataataa 9824398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 190
Target Start/End: Complemental strand, 22316747 - 22316639
Alignment:
Q  82 tttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatgtgga 181  Q
    |||||||||||| ||||||| || ||||||||||||||||||||| |||||| | |||||||||||| |||||||| ||||| | || |||||| |||||    
T  22316747 tttgtctggttgcacacgtacatagaagaagacaaaagaactgctctatcagttactatgatagagacaactcacagaataagacaaaagcttacgtgga 22316648  T
Q  182 ttatgggtc 190  Q
    || ||||||    
T  22316647 ttctgggtc 22316639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 5842869 - 5842711
Alignment:
Q  64 tcttcgttcctagtgtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataa 163  Q
    |||| |||| || |||||||| | |||||| ||||||| |   |||||||||||||||||||| |||||||| |||||||||||| |||||||| |||||    
T  5842869 tctttgttcttaatgtcctttatttggttgcacacgtagacataagaagacaaaagaactgctctatcagatactatgatagagacaactcacataataa 5842770  T
Q  164 taaaatagcttatgtggattatgggtcccttagatccaagta-gccagtcaaattttgt 221  Q
     | || || |||||| |||| ||||||| | |||| |||||| |||||||| |||||||    
T  5842769 gataaaagattatgtagattctgggtccttcagattcaagtatgccagtcagattttgt 5842711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 2667 - 2795
Alignment:
Q  77 tgtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttat 176  Q
    |||||||| ||| |||| |||| || |  |||||||||||||||||| || |||||||| |||||||||||| ||||||||  |||| | || |||||||    
T  2667 tgtcctttttcttgttgcacacatagacagaagaagacaaaagaactactctatcagatactatgatagagacaactcacagtataagacaaaagcttat 2766  T
Q  177 gtggattatgggtcccttagatccaagta 205  Q
    ||| ||||||||||||| | |||||||||    
T  2767 gtgaattatgggtccctcatatccaagta 2795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 5826350 - 5826526
Alignment:
Q  56 cgttgttatcttcgttcctagtgtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactca 155  Q
    ||||||| ||||||||| |  ||||||||||||||||| ||||||| || ||| |||||||||| | |||| ||||||||  ||||||||  | ||||||    
T  5826350 cgttgttctcttcgttcttgatgtcctttgtctggttgcacacgtagatagaaaaagacaaaagcattgctctatcagatattatgatagtaacaactca 5826449  T
Q  156 caaaataataaaatagcttatgtggattatgggtcccttagatccaagtagccagtcaaattttgtgtttgatgtcc 232  Q
    || ||||| | || | |||| ||| ||| || ||| || |||||||||||||||| |||||| || || ||||||||    
T  5826450 cataataagacaaaatcttacgtgaattctgagtctctcagatccaagtagccagccaaattctgcgtctgatgtcc 5826526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 23432931 - 23432813
Alignment:
Q  115 aaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatgtggattatgggtcccttagatccaagta-gccagtca 213  Q
    |||| ||||||| |||||||| |||||||||||  |||||||| ||||| | || |||||| || ||||   ||||||| ||||||||||| ||||||||    
T  23432931 aaaaaaactgctctatcagatactatgatagaggcaactcacagaataagacaaaagcttacgtagattcctggtccctcagatccaagtatgccagtca 23432832  T
Q  214 aattttgtgtttgatgtcc 232  Q
     ||| ||||||||||||||    
T  23432831 gattctgtgtttgatgtcc 23432813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 5828949 - 5829131
Alignment:
Q  56 cgttgttatcttcgttcctagtgtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatag------agat 149  Q
    ||||||| ||||||||| |  ||||||||||||||||| ||||||| || ||| |||||||||| | |||| ||||||||  ||||||||        |     
T  5828949 cgttgttctcttcgttcttgatgtcctttgtctggttgcacacgtagatagaaaaagacaaaagcattgctctatcagatattatgatagcaacaactac 5829048  T
Q  150 aactcacaaaataataaaatagcttatgtggattatgggtcccttagatccaagtagccagtcaaattttgtgtttgatgtcc 232  Q
    |||||||| ||||| | || |||||| ||| ||| || ||| || ||||||||||||| || |||||| ||||| ||||||||    
T  5829049 aactcacataataagacaaaagcttacgtgaattctgagtctctcagatccaagtagctagccaaattctgtgtctgatgtcc 5829131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 18565905 - 18566003
Alignment:
Q  107 aagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatgtggattatgggtcccttagatccaagta 205  Q
    ||||||||||||||||| || ||||||||  |||||||||||   |||||||||||| | || ||  || ||||||| ||||||||| |||||||||||    
T  18565905 aagaagacaaaagaacttctttatcagataatatgatagagacctctcacaaaataagacaaaagtctacgtggattctgggtccctcagatccaagta 18566003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 229
Target Start/End: Complemental strand, 16197507 - 16197355
Alignment:
Q  77 tgtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttat 176  Q
    |||||||||||| |||| | ||||| |  |||| |||||||||||||||| ||||||||  |||||||| || ||| |||||||||| | || || |||     
T  16197507 tgtcctttgtctagttgtatacgtagacagaaggagacaaaagaactgctctatcagatattatgatagtgacaacacacaaaataagataaaagtttac 16197408  T
Q  177 gtggattatgggtcccttagatccaagtagccagtcaaattttgtgtttgatg 229  Q
     ||||||||| |||||| ||||||||||| ||||||| ||| ||||| |||||    
T  16197407 atggattatgagtccctcagatccaagtacccagtcagattctgtgtatgatg 16197355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 232
Target Start/End: Original strand, 25348187 - 25348303
Alignment:
Q  116 aaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatgtggattatgggtcccttagatccaagtagccagtcaaa 215  Q
    |||||||| || || |||||||||||||||||| |||||||| ||||| | || | |||| ||||||| | ||||||| |||||||| || || ||||||    
T  25348187 aaagaacttctctaccagatgctatgatagagacaactcacagaataacacaaaatcttacgtggattctaggtccctgagatccaattatcctgtcaaa 25348286  T
Q  216 ttttgtgtttgatgtcc 232  Q
    ||||| || ||||||||    
T  25348287 ttttgcgtctgatgtcc 25348303  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 8685730 - 8685884
Alignment:
Q  78 gtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatg 177  Q
    |||||||||||| ||| ||| ||| |  ||| ||||||||| |||| || ||| |||| |||||||||||| |||||||| ||||| | || |||||| |    
T  8685730 gtcctttgtctgtttgcacatgtagacagaataagacaaaaaaacttctctattagatactatgatagagaaaactcacataataagacaaaagcttacg 8685829  T
Q  178 tggattatgggtcccttagatccaagta-gccagtcaaattttgtgtttgatgtc 231  Q
    | ||||   ||||||| | ||||||||| |||| ||| ||| |||||||||||||    
T  8685830 tagattcctggtccctcatatccaagtatgccaatcagattctgtgtttgatgtc 8685884  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 16152216 - 16152144
Alignment:
Q  113 acaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatgtggattat 185  Q
    ||||||||||| || |||||||| |||||||||||| || ||| | ||||| | || ||| ||||||||||||    
T  16152216 acaaaagaactactctatcagatactatgatagagacaaatcaaagaataagacaaaagcatatgtggattat 16152144  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 21318506 - 21318624
Alignment:
Q  64 tcttcgttcctagtgtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataa 163  Q
    |||||||||||| || | |||||||||||| ||||||| |  |||||||||||||| ||| || |||||||| ||||||||||||||||||||| |||||    
T  21318506 tcttcgttcctaatg-cttttgtctggttgcacacgtagacagaagaagacaaaagcactactctatcagatactatgatagagataactcacagaataa 21318604  T
Q  164 taaaatagcttatgtggatt 183  Q
     | || |||||| |||||||    
T  21318605 gacaaaagcttacgtggatt 21318624  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 11829531 - 11829429
Alignment:
Q  111 agacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatgtggattatgggtcccttagatccaagta-gcca 209  Q
    |||||||||||||||||| ||| || |||||| ||||| |||||||||||||| || | |||||| || ||||  |||||||| ||||||||||| ||||    
T  11829531 agacaaaagaactgctatttcaaatactatgagagagacaactcacaaaataa-aacaaagcttacgtagattcagggtccctcagatccaagtatgcca 11829433  T
Q  210 gtca 213  Q
    ||||    
T  11829432 gtca 11829429  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 13340804 - 13340747
Alignment:
Q  78 gtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagat 135  Q
    ||||||||||| |||| ||||||| |  |||||||||||||||||| || ||||||||    
T  13340804 gtcctttgtctagttgcacacgtagacagaagaagacaaaagaactcctctatcagat 13340747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 19731562 - 19731642
Alignment:
Q  77 tgtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcaca 157  Q
    ||||||||||||||||| ||||||| |  ||||||||||||| ||||||| |||||||| |||||||||||||| ||||||    
T  19731562 tgtcctttgtctggttgcacacgtagacagaagaagacaaaataactgctctatcagatactatgatagagatagctcaca 19731642  T

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Target: scaffold0041 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 26530 - 26641
Alignment:
Q  81 ctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttatgtgg 180  Q
    ||||||||| ||| ||||||| || ||||||||||||| ||||||| ||| | || ||| ||||| ||||| ||||| ||||| | || ||  |||||||    
T  26530 ctttgtctgtttgcacacgtagatagaagaagacaaaataactgctctataacatactacgatagggataattcacagaataagacaa-agtatatgtgg 26628  T
Q  181 attatgggtccct 193  Q
    |||||||||||||    
T  26629 attatgggtccct 26641  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 9756580 - 9756448
Alignment:
Q  77 tgtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttat 176  Q
    ||||| ||||||| ||| |||| || |  ||| ||||||||| |||| || |||||||| |||| ||||||| |||||||| ||||| | || ||||||     
T  9756580 tgtccgttgtctgtttgtacacatagacagaaaaagacaaaataacttctctatcagatactattatagagacaactcacagaataagacaaaagcttac 9756481  T
Q  177 gtggattatgggtcccttagatccaagtagcca 209  Q
    ||||| | |||||||||   |||||||||||||    
T  9756480 gtggaatctgggtccctcgtatccaagtagcca 9756448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 19223794 - 19223698
Alignment:
Q  67 tcgttcctagtgtcctttgtctggttgaacacgtatatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataa 163  Q
    ||||||||  |||||||||||  || | ||||||| | ||||||||||||||||| |||| ||||||||||  |||| || | |||||||| |||||    
T  19223794 tcgttcctgatgtcctttgtcctgtcgtacacgtagacggaagaagacaaaagaattgctctatcagatgcactgattgacaaaactcacagaataa 19223698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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