View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_163 (Length: 242)
Name: NF6871A_low_163
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_163 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 45141703 - 45141504
Alignment:
| Q |
27 |
atggtgttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatt |
126 |
Q |
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| T |
45141703 |
atggtgttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatt |
45141604 |
T |
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| Q |
127 |
tttccaatgcgaaagctactgtttcttcaacttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttg |
226 |
Q |
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| T |
45141603 |
tttccaatgcgaaagctactgtttcttcaacttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttg |
45141504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 45152294 - 45152147
Alignment:
| Q |
79 |
caccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaacttgtttttcatctctcacatc |
178 |
Q |
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| T |
45152294 |
cacctccaattccagcattgctgaacatgatgtctaaggttccatatttttccaatgcaaaagctacggtttcctcaacttgtttttcatcactcacatc |
45152195 |
T |
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| Q |
179 |
acaatggtggtaactcactttgtctaacccaattgaagttgcaacttg |
226 |
Q |
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| T |
45152194 |
acaatggtggtaactcactttgtctaacccaattgaagttgcaacttg |
45152147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 38256167 - 38255975
Alignment:
| Q |
27 |
atggtgttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatt |
126 |
Q |
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|||||||||||||||||||| || | ||||||||||||||| ||| | | ||| | | ||||| ||||| ||||| ||||||| ||| |||||| |
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| T |
38256167 |
atggtgttgtcaaattcatttaggttaaattctagtatgct---agataaaggaccagcgttaccagcattgctgaacatgatgtctaaggtaccatatc |
38256071 |
T |
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| Q |
127 |
tttccaatgcgaaagctactgtttcttcaacttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaa |
222 |
Q |
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| T |
38256070 |
tctccaacgtgaaagcaacaatttcctcaacttgtttctcctctctcacgtcacagtggtggtaactcactttgtctaacccaattgaagttgcaa |
38255975 |
T |
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