View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_166 (Length: 242)
Name: NF6871A_low_166
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_166 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 42072077 - 42071871
Alignment:
| Q |
18 |
caaagaattggttcacaaaggcaagggcaatgcaagacacaaaaccaataacccatgtcctaaatgttagtgctggttgtgtagggtcgtctgttattga |
117 |
Q |
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| T |
42072077 |
caaagaattggttcacaaaggcaagggcaatgcaagacacaaaaccaataacccatgtcctaaatgttagtgctggttgtgtagggtcgtctgttattga |
42071978 |
T |
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| Q |
118 |
cactgttagtctgacttgctctacaggagaatcatccacttctgtgtcatcatctgcatcacacacatacaacaatgtgaacaactatgaagcattgaca |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42071977 |
cactgttagtctgacttgctctataggagaatcatccacttctgtgtcatcatctgcatcacacacatacaacaatgtaaacaactatgaagcattgaca |
42071878 |
T |
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| Q |
218 |
cagacac |
224 |
Q |
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||||||| |
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| T |
42071877 |
cagacac |
42071871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 42055875 - 42055715
Alignment:
| Q |
18 |
caaagaattggttcacaaaggcaagggcaatgcaagacacaaaaccaataacccatgtcctaaatgttagtgctggttgtgtagggtcgtctgttattga |
117 |
Q |
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|||||||||||||||||||||||||| |||||||| | | |||||||||| ||||||||||||||| |||||||||||||| |||||||||||| |||| |
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| T |
42055875 |
caaagaattggttcacaaaggcaaggacaatgcaacatgccaaaccaataatccatgtcctaaatgtcagtgctggttgtgttgggtcgtctgttgttga |
42055776 |
T |
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| Q |
118 |
cactgttagtctgacttgctctacaggagaatcatccacttctgtgtcatcatctgcatca |
178 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42055775 |
cactgttagtctgacctgctctattggagaatcatccacttctgtgtcatcatctgcatca |
42055715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 42081025 - 42080865
Alignment:
| Q |
18 |
caaagaattggttcacaaaggcaagggcaatgcaagacacaaaaccaataacccatgtcctaaatgttagtgctggttgtgtagggtcgtctgttattga |
117 |
Q |
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|||||||||||||||||||||||||| |||||||| | | |||||||||| ||||||||||||||| |||||||||||||| |||||||||||| |||| |
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| T |
42081025 |
caaagaattggttcacaaaggcaaggacaatgcaacatgccaaaccaataatccatgtcctaaatgtcagtgctggttgtgttgggtcgtctgttgttga |
42080926 |
T |
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| Q |
118 |
cactgttagtctgacttgctctacaggagaatcatccacttctgtgtcatcatctgcatca |
178 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42080925 |
cactgttagtctgacctgctctattggagaatcatccacttctgtgtcatcatctgcatca |
42080865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 42055693 - 42055651
Alignment:
| Q |
176 |
tcacacacatacaacaatgtgaacaactatgaagcattgacac |
218 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
42055693 |
tcacacacatataacaataagaacaactatgaagcattgacac |
42055651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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