View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_167 (Length: 241)
Name: NF6871A_low_167
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_167 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 37427683 - 37427910
Alignment:
| Q |
14 |
agacaacataaaatagaaaggaagaaaagcccttttccgaagaaatcaaatgtgaggcaataaccaatacataatatctttagtttgattcaacaactca |
113 |
Q |
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| T |
37427683 |
agacaacataaaatagaaaggaagaaaagcccttttccgaagaaatcaaatgtgaggcaataaccaatacataatatctttagtttgtttcaacaactca |
37427782 |
T |
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| Q |
114 |
cttccttcaagatattagaaaagagatgcttttgcaaatatgacggtacactgtctcccaggtgtccatcgtatatagcaaaaagtcctagctcttgtcc |
213 |
Q |
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| T |
37427783 |
cttccttcaagatattagaaaagagatgcttttgcaaatatgacggtacactgtctcccaggtgtccatcgtatatagcaaaaagtcctagctcttgtcc |
37427882 |
T |
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| Q |
214 |
tttgaaatggacaatttttgctacgtga |
241 |
Q |
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| T |
37427883 |
tttgaaatggacaatttttgctacgtga |
37427910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 1664706 - 1664573
Alignment:
| Q |
108 |
aactcacttccttcaagatattagaaaagagatgcttttgcaaatatgacggtacactgtctcccaggtgtccatcgtatatagcaaaaagtcctagctc |
207 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||| | || ||| |||| ||| ||||||||| |||||||||||||||| | ||| |
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| T |
1664706 |
aactcacttccttcaagatattagaaaagagatgtttttgtaaataggcaggcacagtgtcacccgagtgtccatcaaatatagcaaaaagtcccaactc |
1664607 |
T |
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| Q |
208 |
ttgtcctttgaaatggacaatttttgctacgtga |
241 |
Q |
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| T |
1664606 |
tcgcccgttgaactggacgattttcgcaacgtga |
1664573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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