View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_172 (Length: 239)
Name: NF6871A_low_172
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_172 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 1414248 - 1414021
Alignment:
| Q |
1 |
atataaacaacgacaattttgtcaaaacgtaaatttgacataatgtgtttcatgctgtatttacggatcatgctagaatgctttgggacaccatgctttt |
100 |
Q |
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| T |
1414248 |
atataaacaatgacaattttgtcaaaacgtaaatttgacataatgtgtttcatgctgtatttacggatcatgctagaatgctttgggacaccatgctttt |
1414149 |
T |
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| Q |
101 |
ggatcaaacacttgtgagnnnnnnntgcctaacaatagctttgagacacgtgttggataaaaagacagagagatgggattgacacaaacattagacaatg |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1414148 |
ggatcaaacacttgtgagaaaaaaatgcctaacaatagctttgagacacgtgttggataaaaagacagagagatgggattgacacaaacattagacaatg |
1414049 |
T |
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| Q |
201 |
gtaatcttttttacggtactaatgatgt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1414048 |
gtaatcttttttacggtactaatgatgt |
1414021 |
T |
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