View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_173 (Length: 239)
Name: NF6871A_low_173
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_173 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 10787425 - 10787238
Alignment:
| Q |
36 |
atggacatcacgtgttttgcattatgaggtgtacccaattcatgcttgaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
135 |
Q |
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||||||||||| |||| |||||| ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10787425 |
atggacatcacatgttctgcattctgaggtgtacccagttcatgctagaccctgagccctgcattcctaccgtccaaggcttgttgcagaatgctatgga |
10787326 |
T |
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| Q |
136 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggtgtttaacggcgtcagacttgattccgctagactttttcatgat |
223 |
Q |
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| T |
10787325 |
cgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgat |
10787238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 14688368 - 14688555
Alignment:
| Q |
36 |
atggacatcacgtgttttgcattatgaggtgtacccaattcatgcttgaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
135 |
Q |
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||||||||||| |||| |||||| ||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||| ||||| |
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| T |
14688368 |
atggacatcacatgttctgcattttgaggtgcacccagttcatgctggaccctgagccctgcatccctaccatccaaggtttgttgaagaatgccatgga |
14688467 |
T |
|
| Q |
136 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggtgtttaacggcgtcagacttgattccgctagactttttcatgat |
223 |
Q |
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||| |||||||||||||||||||| ||||| || |||||||||| | || |||| ||| || |||| |||||| ||||||||||||| |
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| T |
14688468 |
tgctggctctgtgaccgccctgtatttcgacgtgctgctgagggcgcttgacggtatcacacctgataccgctacactttttcatgat |
14688555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 7360370 - 7360557
Alignment:
| Q |
36 |
atggacatcacgtgttttgcattatgaggtgtacccaattcatgcttgaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
135 |
Q |
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||||||| ||| |||| |||||| ||||||||||||| |||||||| || |||||||||||| | |||||||||||||| || ||| ||||||| ||||| |
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| T |
7360370 |
atggacaccacatgttctgcattttgaggtgtacccagttcatgctggatcctgagccctgcgtccctaccatccaaggtttcttgaagaatgccatgga |
7360469 |
T |
|
| Q |
136 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggtgtttaacggcgtcagacttgattccgctagactttttcatgat |
223 |
Q |
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||| |||||||||||||| ||||||||||| ||||||||||||| | || |||| |||| || |||| ||||| ||||||||||||| |
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| T |
7360470 |
tgctggctctgtgaccgctctgtacttcgacgtactgctgagggcgcttgacggtgtcacacctgatgccgctgcactttttcatgat |
7360557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 41375346 - 41375532
Alignment:
| Q |
36 |
atggacatcacgtgttttgcattatgaggtgtacccaattcatgcttgaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
135 |
Q |
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|||||||||| |||| |||||| ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| || ||||||||||||| |
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| T |
41375346 |
atggacatcatatgttctgcattttgaggtgtacccagttcatgctggaccctgagccctgcattcctaccgtccaaggcttgctgaagaatgctatgga |
41375445 |
T |
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| Q |
136 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggtgtttaacggcgtcagacttgattccgctagactttttcatga |
222 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |
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| T |
41375446 |
cgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatga |
41375532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 22081242 - 22081099
Alignment:
| Q |
36 |
atggacatcacgtgttttgcattatgaggtgtacccaattcatgcttgaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
135 |
Q |
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|||||||||| ||||||||||| |||| ||||||||||| ||| | || |||||| |||||||||||| || |||| || | |||| || ||||| |
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| T |
22081242 |
atggacatcatatgttttgcattttgagatgtacccaatttatgttggatattgagccatgcattcctaccgtcaaaggttttcttaagaacgccatgga |
22081143 |
T |
|
| Q |
136 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgaggg |
179 |
Q |
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||| || ||||||||||| || |||||||| ||||||||||||| |
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| T |
22081142 |
tgctggttctgtgaccgctctctacttcgacgtactgctgaggg |
22081099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 1730243 - 1730056
Alignment:
| Q |
36 |
atggacatcacgtgttttgcattatgaggtgtacccaattcatgcttgaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
135 |
Q |
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|||||||||| |||| |||||| |||||||||| || |||||||| ||||||||||||| ||||||||| ||||||| ||| || ||||||||||||| |
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| T |
1730243 |
atggacatcatatgttctgcattttgaggtgtactcagttcatgctgtaccctgagccctgtattcctaccgtccaaggtttgctgaagaatgctatgga |
1730144 |
T |
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| Q |
136 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggtgtttaacggcgtcagacttgattccgctagactttttcatgat |
223 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
1730143 |
cgctggctctgtgaccgccctgtacttcgatgtactgctgagggtgcttaacgatgtcagacttgattccgctagactttttcatgat |
1730056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 14328899 - 14329086
Alignment:
| Q |
36 |
atggacatcacgtgttttgcattatgaggtgtacccaattcatgcttgaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
135 |
Q |
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|
||||||||||| |||| |||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||| ||| || ||||||| ||||| |
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| T |
14328899 |
atggacatcacatgttctgcattttgaggtgtacccagttcatgctggaccctgagccctgcatccctaccatctaaggtttgctgaagaatgccatgga |
14328998 |
T |
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| Q |
136 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggtgtttaacggcgtcagacttgattccgctagactttttcatgat |
223 |
Q |
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||| |||||||||||||| ||||||||||| ||||||||||||| | || |||| ||| || |||| |||||| ||||||||||||| |
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| T |
14328999 |
tgctggctctgtgaccgctctgtacttcgacgtactgctgagggcgcttgacggtatcacacctgatgccgctacactttttcatgat |
14329086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 24954977 - 24954790
Alignment:
| Q |
36 |
atggacatcacgtgttttgcattatgaggtgtacccaattcatgcttgaccctgagccctgcattcctaccatccaaggcttgttgcagaatgctatgga |
135 |
Q |
| |
|
||||||| ||| |||| |||||| ||||||||||||| |||||| | ||||||||||| ||||| |||||||||||||||||| || ||||||| ||||| |
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| T |
24954977 |
atggacaacacatgttctgcattttgaggtgtacccagttcatgttggaccctgagccttgcatccctaccatccaaggcttgctgaagaatgccatgga |
24954878 |
T |
|
| Q |
136 |
tgccggctctgtgaccgccctgtacttcgatgtactgctgagggtgtttaacggcgtcagacttgattccgctagactttttcatgat |
223 |
Q |
| |
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||| |||||||||||||| ||||||||||| ||||||||||||| | || |||| ||| || |||| |||||| ||||||||||||| |
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| T |
24954877 |
tgctggctctgtgaccgctctgtacttcgacgtactgctgagggcgcttgacggtatcacacctgatgccgctacactttttcatgat |
24954790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 23621449 - 23621502
Alignment:
| Q |
124 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgctgag |
177 |
Q |
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||||||||||||||| || ||||||||||| || ||||| |||||| ||||||| |
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| T |
23621449 |
gaatgctatggatgctggttctgtgaccgctctttactttgatgtaatgctgag |
23621502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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