View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_175 (Length: 238)
Name: NF6871A_low_175
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_175 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 10484563 - 10484735
Alignment:
| Q |
11 |
tggtgtgaaggataggaaaggggtaaattaaacctttcctaatatcatagggttagcaacttgatagccaaaacgttctcatcgctccttcacccttcat |
110 |
Q |
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| T |
10484563 |
tggtgtgaaggataggaaaggggtaaattaaacctttcctatcattatagggttagcaacttgatagccaaaacgttctcatcgctccttcacccttcat |
10484662 |
T |
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| Q |
111 |
caggtcaggtaacacctttttcttctattattattatatcagtcgtttctgtcctactcaaacactaaacaagaaa |
186 |
Q |
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| T |
10484663 |
cgggtcaggtaacacctttttcttc---tattattatattagtcgtctctgtcctactcaaacacaaaacaagaaa |
10484735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 17922955 - 17922899
Alignment:
| Q |
182 |
agaaacccacgatgctatttccatccttggatatttttctttccattaattaattat |
238 |
Q |
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| T |
17922955 |
agaaacccacgatgctattaccacccttggatgtttttctttccattagctaattat |
17922899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 45395524 - 45395468
Alignment:
| Q |
182 |
agaaacccacgatgctatttccatccttggatatttttctttccattaattaattat |
238 |
Q |
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| T |
45395524 |
agaaacccacgatgttattaccatccttggatatttttctttccattaactaattat |
45395468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 20015 - 19959
Alignment:
| Q |
182 |
agaaacccacgatgctatttccatccttggatatttttctttccattaattaattat |
238 |
Q |
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| T |
20015 |
agaaagccacgatgttattatcatccttggatgtttttctttccattaattgattat |
19959 |
T |
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