View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_18 (Length: 416)
Name: NF6871A_low_18
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 33940544 - 33940296
Alignment:
| Q |
8 |
caatgagaaattgtcaaaaatataaagcgtaagtcccctcatgcataaacccag-acaaatatgagatttaatatacgaattaacatatttaagaagtaa |
106 |
Q |
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| T |
33940544 |
caatgagcaattttcaaaaatataaagcgtaagtcccctcatgcataaagccaggacaaatatgagatttaatatacgaattaacatatttaagaagtaa |
33940445 |
T |
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| Q |
107 |
caagctcagagattagtattgaaaagtcaactatgaatactaaagcacacttacaaataaaacaggctacttacaatttatttatcatacatgtatatat |
206 |
Q |
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| T |
33940444 |
caagctcagagactagtattgaaaagtcaactatgaatactaaagcacacttacaaataaaacaggctacttacaatttatttatcatacatgtatatat |
33940345 |
T |
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| Q |
207 |
ttaatataaacatgtatggtaaagccagaaacaaatattcatgcataaa |
255 |
Q |
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| T |
33940344 |
ttaatataaacatgtatggtaaagccagaaacaaatattcatgcataaa |
33940296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 265 - 416
Target Start/End: Complemental strand, 33940310 - 33940159
Alignment:
| Q |
265 |
atattcatgcataaatattcttcacaatttatttatcatacatgattaaatttatgcataaagccagaaacaaatatgatatttacgaattaacatattc |
364 |
Q |
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| T |
33940310 |
atattcatgcataaatattcttcacaatttatttatcatacatgtttaaatttatgcataaagccagaaacaaatatgatatttacgaattaacatattt |
33940211 |
T |
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| Q |
365 |
aagatgcaacaagctacaagacttgtattgaaaagtcaagtatgattactga |
416 |
Q |
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| T |
33940210 |
aagatgcaacaagctacaagacttgtattgaaaagtcaagtatgattactga |
33940159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 33940146 - 33940093
Alignment:
| Q |
147 |
taaagcacacttacaaataaaacaggctacttacaatttatttatcatacatgt |
200 |
Q |
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| T |
33940146 |
taaagcacacttacaaataaaacaggtcacttacaatttattcatcatacatgt |
33940093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 33940227 - 33940161
Alignment:
| Q |
81 |
tacgaattaacatatttaagaagtaacaagctcagagattagtattgaaaagtcaactatgaatact |
147 |
Q |
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| T |
33940227 |
tacgaattaacatatttaagatgcaacaagctacaagacttgtattgaaaagtcaagtatgattact |
33940161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 414
Target Start/End: Complemental strand, 33940470 - 33940404
Alignment:
| Q |
348 |
tacgaattaacatattcaagatgcaacaagctacaagacttgtattgaaaagtcaagtatgattact |
414 |
Q |
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| T |
33940470 |
tacgaattaacatatttaagaagtaacaagctcagagactagtattgaaaagtcaactatgaatact |
33940404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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