View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_182 (Length: 234)
Name: NF6871A_low_182
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_182 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 753324 - 753123
Alignment:
| Q |
20 |
atcatcaagctatcgtgcatcatagttccataagaatattagttaataattttggagaaagatgccatatatctgagaatcaaacaaaatttaccttcat |
119 |
Q |
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| T |
753324 |
atcatcaagctatcgtgcatcatagttccataagaatattagttaataattttggagaaagatgccatatatctgagaatcaaacaaaatttaccttcat |
753225 |
T |
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| Q |
120 |
gcgagataaataagaaactatgctagggaaattttgattaatatcctgcattgactgcagaggatcagaagcacggactattctctgtacagtttgatgt |
219 |
Q |
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| T |
753224 |
gcgagataaataagaaactatgctagggaaattttgattaatatcctgcattgactgcagaggatcagaagcacggactattctctgtacagtttgatgt |
753125 |
T |
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| Q |
220 |
cc |
221 |
Q |
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|| |
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| T |
753124 |
cc |
753123 |
T |
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