View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_183 (Length: 233)
Name: NF6871A_low_183
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_183 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 2386356 - 2386143
Alignment:
| Q |
1 |
gagctgatcaacttggtgaagatgaagaactaccttgtagtaacacagatgatacaagtagcaacaaaaaagcacttttctttcaatggtggtattttgg |
100 |
Q |
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| T |
2386356 |
gagctgatcaacttggtgaagatgaagaactaccttgtagtaacacagatgatacaagtagcaacaaaaaagcacttttctttcaatggtggtattttgg |
2386257 |
T |
|
| Q |
101 |
tgtttgtgctggaagcctaatgggtgtaacagtcatgtcttacatccaagatacatttggttgagtaatagggtttgctatacctgcgatttcgatgctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
2386256 |
tgtttgtgctggaagcctaatgggtgtaacagtcatgtcttacatccaagatacatttggttgggtaatagggtttgcgatacctgcgatttcgatgctt |
2386157 |
T |
|
| Q |
201 |
ctttctatcttgat |
214 |
Q |
| |
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|||||||||||||| |
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| T |
2386156 |
ctttctatcttgat |
2386143 |
T |
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