View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6871A_low_184 (Length: 232)
Name: NF6871A_low_184
Description: NF6871A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6871A_low_184 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 44806316 - 44806108
Alignment:
| Q |
11 |
tcgagtttcgtgtttggcattctctcagcagacatcaccatttgtctcgtgtgaagtttgcnnnnnnnngaagacaccccacaagtaatacttggtttga |
110 |
Q |
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| T |
44806316 |
tcgagttacgagtttggcattctctcagcagacatcaccatttgtctcgtgtgaagtttgcttttttttgaagacaccccacaagtaatacttggtttga |
44806217 |
T |
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| Q |
111 |
aattctgtccaaaggataactcaaattaaaacgtaatctaagatgtataaataatttgactgaaatattcaactgaagagctggaatagatgaagctcac |
210 |
Q |
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| T |
44806216 |
aattctgtccaaaggataactcaaattaaaacgtaatctaagatgtataaataatttgactgaaatattcaactgaagagctggaatagatgaagctcac |
44806117 |
T |
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| Q |
211 |
tctgatgtc |
219 |
Q |
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| T |
44806116 |
tctgatgtc |
44806108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 43056419 - 43056275
Alignment:
| Q |
80 |
gaagacaccccacaagtaatacttggtttgaaattctgtccaaaggataactcaaattaaaacgtaatct------aagatgtataaataatttgactga |
173 |
Q |
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| T |
43056419 |
gaagacaccccacaagtaattcttagaatcaaattctgtccaaaagataactcaagttaaaatttaatcttaagataagatgtataaatagtttgactga |
43056320 |
T |
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| Q |
174 |
aatattcaactgaagagctggaatagatgaagctcactctgatgt |
218 |
Q |
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| T |
43056319 |
aatattcaacaaaagagatagaatagttgaaactcactctgatgt |
43056275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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